RNA id: TU554345


Basic Information

Item Value
RNA id TU554345
length 355
RNA type TUCP
GC content 0.45
exon number 2
gene id G483104
representative False

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 3394108 ~ 3401228 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGGACTCCTTCTTTATGTAAACAGACGTGACATAATGATGCAATTACGTCAATTACGTCAAATTACGTAAGACACAGATAATGTCTTATCTGTATACAGAAACCTAACAGTACCATTTGAATTAGAAAACATTATTTCAAGCTTACCGTTGTCAATTGGGCTAAGAAACGACATTGCCCTGATCAAGTTGTCCGAGCCTGTGACACTGAGTGATACTGTTCAGTTGGGCTGCATTCCTCCTGCTGGCTCCGTCCTCCTAAACAACTACCCCTGCTATATTACAGGCTGGGGAAGACTCTCCACTGGAGGCCCTCTTCCCGAAAGACTGCAGCAAGCACTGATGCCCGCTGTGGATCACGCTACCTGCTCCAGGTCTGACTGGTGGGGTTCCACCGTCAAGGAATCTATGGTCTGTGCTGGTGGAGACGGCATTGTTGCTGGCTGCAATGGTGACTCTGGCGGTCCTCTGAACTGTAAGAACTCTGACGGCATCTGGGAGGTGCACGGTATTGCCAGCTTCGTTTCTGGTTTGGGCTGTAACACTCAGAAGAAGCCTACTGTCTTTACCCGTGTGTCCTCTTTCAATGATTGGATCGACAAGACCATGGTGAACAATTAAGATGGACCAAGGATGCTGACCTTATTTTAATACTAAAAAACCAACCCACCAAGAAATAAATAAATGCATAAATACAAATAAATAATTGCTCAACAAGGGATCAACTTCTTCCATCAGTCTTTTTTCTTTTTCCACTCTCCCACACTGATTCAATAAACTTCCAAATGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554381 lncRNA downstream 1706 3388626 ~ 3392402 (-) True G483138
TU554334 lncRNA downstream 60143 3327332 ~ 3333965 (-) True G483096
TU554328 lncRNA downstream 136656 3257211 ~ 3257452 (-) True G483091
TU554327 lncRNA downstream 138420 3255470 ~ 3255688 (-) True G483090
TU554326 lncRNA downstream 138999 3254865 ~ 3255109 (-) True G483089
TU554417 lncRNA upstream 16864 3414224 ~ 3414567 (-) True G483174
TU554426 lncRNA upstream 71475 3468835 ~ 3471214 (-) False G483183
TU554427 lncRNA upstream 71475 3468835 ~ 3473934 (-) True G483183
TU554369 lncRNA upstream 199273 3596633 ~ 3599543 (-) True G483126
TU554378 lncRNA upstream 215055 3612415 ~ 3616131 (-) True G483135
CI01000339_03381958_03384851.mRNA mRNA downstream 9257 3381590 ~ 3384851 (-) True CI01000339_03381958_03384851
CI01000339_03262786_03280070.mRNA mRNA downstream 112445 3262460 ~ 3281663 (-) True CI01000339_03262786_03280070
CI01000339_03170194_03171639.mRNA mRNA downstream 222469 3169305 ~ 3171639 (-) True CI01000339_03170194_03171639
CI01000339_03158702_03162745.mRNA mRNA downstream 231358 3158702 ~ 3162750 (-) True CI01000339_03158702_03162745
CI01000339_03122212_03130173.mRNA mRNA downstream 263935 3121645 ~ 3130173 (-) True CI01000339_03122212_03130173
CI01000339_03405806_03412956.mRNA mRNA upstream 8446 3405806 ~ 3412956 (-) False CI01000339_03405806_03412956
CI01000339_03443598_03446397.mRNA mRNA upstream 45465 3442825 ~ 3446397 (-) True CI01000339_03443598_03446397
CI01000339_03447329_03451527.mRNA mRNA upstream 49813 3447173 ~ 3451527 (-) True CI01000339_03447329_03451527
CI01000339_03452377_03456540.mRNA mRNA upstream 54765 3452125 ~ 3456540 (-) True CI01000339_03452377_03456540
CI01000339_03478894_03491264.mRNA mRNA upstream 81525 3478885 ~ 3491264 (-) True CI01000339_03478894_03491264
TU552772 other downstream 1396663 1990462 ~ 1997445 (-) True G481716
TU552698 other downstream 1661089 1723770 ~ 1733019 (-) False G481662
TU552699 other downstream 1661089 1723770 ~ 1733019 (-) True G481662
TU552634 other downstream 1820146 1571537 ~ 1573962 (-) True G481610
TU552119 other downstream 2277960 1114129 ~ 1116148 (-) True G481157
TU554347 other upstream 3854 3401214 ~ 3401228 (-) True G483104
TU554443 other upstream 380531 3777891 ~ 3778551 (-) True G483199
TU554535 other upstream 727898 4125258 ~ 4170502 (-) True G483285
TU554799 other upstream 1215492 4612852 ~ 4613318 (-) True G483509
TU554803 other upstream 1220752 4618112 ~ 4618725 (-) True G483512

Expression Profile