RNA id: CI01000339_05240700_05241683.mRNA



Basic Information


Item Value
RNA id CI01000339_05240700_05241683.mRNA
length 1366
RNA type mRNA
GC content 0.37
exon number 1
gene id CI01000339_05240700_05241683
representative True

Chromosome Information


Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5240318 ~ 5241683 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAATAGCACAGAGATCTCTTTAAAGAATGCCACCAGCGGCGACATCAACTTTTGTCCCATAAAGCCTCAGCACATCTCCATCCCTGTGCTCATTTGTCTGACCTTCTTGGTGGGACTCCTGCTCAATGTCTTCAGTCTGTGGGTGTTCACATGCAGGACACCAGTGTGGAAGTCCAGCGCAGTTCTTCAATTTCATCTAGCTGTCAGTGATGTCATAATATGTCCTATGGGACCATTTATGGCAGTATATTATCATTCTGCTAACTGGCTTTTTGGGAAAGCTCTCTGTCGGCTTAAAGTAGCTTTAATGTTCTTTCACATTTACAGCAGTATTCTGTTTCTCTCTCTAATTAGCATTCACCGCTATGTGGCCGTGGTGCACTACAATCGAAACTCTTGCATGAATCGAAAGGACTTTGTCCAGAAACTCTGTGTTGGAGTTTGGCTTTTTGTATTGATAATGGGAACTGCATTCGCCGCTATTGTAGACACGAGCACAGTGGACAATCACACTTTATGCCTCAGCATTCACCAAAGACAATATATGGACTTCTATTTCATTGTAAACTTCACTTTCCTCATTCCTGTATTACTTCTAGCATTCATTGTTTCTGTAGTCTGCTACTGTCTTCTGGTGCGCTCGATGTCCCATCTCGACACTAGCCATGACAATGGACAAGCTATTAAGAACAAATCACGTAAAATGGTGGCTGTTTGTTTGCTAACATTTGTTGCTTATTTCATGCCTATGAATGTGGTGCGCAGTGTGGGTATTGTGGTCCAGAAAGTCTTCCCCCGCAAATGCAGCCTACTTTTAGAAATGGAAACTGCATATTATGTGTCATGGATTGTGGCTGGTGCCAACTGCTGTCTAGATCCAATTATATATTGTTTCAGTTCTAAGAAATTCATGAGAAATGTTCATATCTCTCTTAGTAAAATAGGTGTGAGGTGTGAAACAGGGCATGATGAATCTTTATAAGACTGACCTCATGTTAGCTAGATGTTAGCTACTTTTTGATTGATTACATTATGTATGTATTATAATATTAATATGCATTATGTGTGCATTTTGTTTTGAAAATTCATATTTTCTTTTAAAATTGCAGTGAAATTTCATATATATGCTTGTTTGAAAAATATTTTGCTTAGTTTTATGAAGTGTATGATTATGATAGCTGTTGATTAAGTGCAGCTTATAAGATTTTTATTGTTTTGATTTATTATTTTCTTCATTGACATTCAATATATAAGCTTCATTAGACTAGTTAGATGGAAAACAATTGTCATACATTATCTAAAGTGTTAGTTTTTAACTAGAATGACAAGGGTGGAGTTTGGGTTAATGTCTGTTGACTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU555837 lncRNA downstream 62750 5177153 ~ 5177568 (-) True G484405
TU554912 lncRNA downstream 329505 4904837 ~ 4910813 (-) True G483614
TU554758 lncRNA downstream 358575 4880528 ~ 4881743 (-) True G483480
TU554908 lncRNA downstream 360763 4879340 ~ 4879555 (-) True G483610
TU554907 lncRNA downstream 361067 4878706 ~ 4879251 (-) True G483609
TU555831 lncRNA upstream 14288 5255971 ~ 5256317 (-) False CI01000339_05254264_05259467
TU555872 lncRNA upstream 119233 5360916 ~ 5361196 (-) False G484436
TU555874 lncRNA upstream 119233 5360916 ~ 5361470 (-) False G484436
TU555876 lncRNA upstream 119233 5360916 ~ 5361430 (-) True G484436
TU555901 lncRNA upstream 148086 5389769 ~ 5389979 (-) True G484452
CI01000339_05238728_05239733.mRNA mRNA downstream 585 5238256 ~ 5239733 (-) True CI01000339_05238728_05239733
CI01000339_05236618_05236983.mRNA mRNA downstream 3335 5236500 ~ 5236983 (-) True CI01000339_05236618_05236983
CI01000339_05228715_05234656.mRNA mRNA downstream 5662 5228418 ~ 5234656 (-) True CI01000339_05228715_05234656
CI01000339_05212333_05226259.mRNA mRNA downstream 14059 5211812 ~ 5226259 (-) True CI01000339_05212333_05226259
CI01000339_05096677_05210034.mRNA mRNA downstream 30284 5096677 ~ 5210034 (-) True CI01000339_05096677_05210034
CI01000339_05245266_05252163.mRNA mRNA upstream 3260 5244943 ~ 5252163 (-) True CI01000339_05245266_05252163
CI01000339_05254264_05259467.mRNA mRNA upstream 12581 5254264 ~ 5259654 (-) False CI01000339_05254264_05259467
CI01000339_05264265_05270065.mRNA mRNA upstream 22582 5264265 ~ 5270065 (-) False CI01000339_05264265_05270065
CI01000339_05286494_05309122.mRNA mRNA upstream 44367 5286050 ~ 5309342 (-) False CI01000339_05286494_05309122
CI01000339_05329216_05330546.mRNA mRNA upstream 87457 5329140 ~ 5330546 (-) True CI01000339_05329216_05330546
TU554760 other downstream 386871 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 621593 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 627000 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 1069816 4125258 ~ 4170502 (-) True G483285
TU554443 other downstream 1461767 3777891 ~ 3778551 (-) True G483199
TU555826 other upstream 14884 5274086 ~ 5274270 (-) True G484394
TU556180 other upstream 782049 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 1012648 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 1759210 7000893 ~ 7004773 (-) True G484826

Expression Profile