RNA id: TU555831


Basic Information

Item Value
RNA id TU555831
length 237
lncRNA type sense_over
GC content 0.48
exon number 2
gene id CI01000339_05254264_05259467
representative False

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5254264 ~ 5259654 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCTACTCAGATCACATTTGTGACTAAACAAGCAGTGGAGAACCAGGACAATCTGATGAATCTGCGGCTGTACGGACAAAACTATCTGATTTACACTCAGAGCTTTCTGTGTTATGGCCGAGACCAGGTCTTACTCAGACTGCTGGCACATCTGATGACGACTCAGGGTTCAGACAGCTCCATAGTCCATCCCTGCTATCCCACAGGTTACGATCAATCCATAAAGCTGGGCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555837 lncRNA downstream 78403 5177153 ~ 5177568 (-) True G484405
TU554912 lncRNA downstream 345158 4904837 ~ 4910813 (-) True G483614
TU554758 lncRNA downstream 374228 4880528 ~ 4881743 (-) True G483480
TU554908 lncRNA downstream 376416 4879340 ~ 4879555 (-) True G483610
TU554907 lncRNA downstream 376720 4878706 ~ 4879251 (-) True G483609
TU555872 lncRNA upstream 104599 5360916 ~ 5361196 (-) False G484436
TU555874 lncRNA upstream 104599 5360916 ~ 5361470 (-) False G484436
TU555876 lncRNA upstream 104599 5360916 ~ 5361430 (-) True G484436
TU555901 lncRNA upstream 133452 5389769 ~ 5389979 (-) True G484452
TU555907 lncRNA upstream 149013 5405330 ~ 5405546 (-) True G484458
CI01000339_05245266_05252163.mRNA mRNA downstream 3808 5244943 ~ 5252163 (-) True CI01000339_05245266_05252163
CI01000339_05240700_05241683.mRNA mRNA downstream 14288 5240318 ~ 5241683 (-) True CI01000339_05240700_05241683
CI01000339_05238728_05239733.mRNA mRNA downstream 16238 5238256 ~ 5239733 (-) True CI01000339_05238728_05239733
CI01000339_05236618_05236983.mRNA mRNA downstream 18988 5236500 ~ 5236983 (-) True CI01000339_05236618_05236983
CI01000339_05228715_05234656.mRNA mRNA downstream 21315 5228418 ~ 5234656 (-) True CI01000339_05228715_05234656
CI01000339_05264265_05270065.mRNA mRNA upstream 7948 5264265 ~ 5270065 (-) False CI01000339_05264265_05270065
CI01000339_05286494_05309122.mRNA mRNA upstream 29733 5286050 ~ 5309342 (-) False CI01000339_05286494_05309122
CI01000339_05329216_05330546.mRNA mRNA upstream 72823 5329140 ~ 5330546 (-) True CI01000339_05329216_05330546
CI01000339_05381662_05386593.mRNA mRNA upstream 124973 5381290 ~ 5386593 (-) True CI01000339_05381662_05386593
CI01000339_05387768_05396589.mRNA mRNA upstream 131378 5387695 ~ 5396589 (-) True CI01000339_05387768_05396589
TU554760 other downstream 402524 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 637246 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 642653 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 1085469 4125258 ~ 4170502 (-) True G483285
TU554443 other downstream 1477420 3777891 ~ 3778551 (-) True G483199
TU555826 other upstream 250 5274086 ~ 5274270 (-) True G484394
TU556180 other upstream 767415 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 998014 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 1744576 7000893 ~ 7004773 (-) True G484826

Expression Profile