RNA id: CI01000339_05329216_05330546.mRNA


Basic Information

Item Value
RNA id CI01000339_05329216_05330546.mRNA
length 413
RNA type mRNA
GC content 0.47
exon number 2
gene id CI01000339_05329216_05330546
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5329140 ~ 5330546 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACCCACACAATGAGATCAACCGGCTGAGCTGTGATGAAGCAAGGAATTTCTATGGTGGGATTGTTAGCGTGATTCCATTGGCCCTAGACCTCCTCACCACCTACGGTAGAGGAGGTACTCAACATCCCACTCCAACAGCTACAGAAACATCTCAACAATCAGTGGCAAAGAATGTGGGGACGGTTGCAGACCTTGATAAAGACACCAGTCTCGACTGGACAAATGCACCTACAGCAGCCTGGCCTGTGTTCTATAAGGCTCTGACGGTCCTGCAAAGCAGCAATCTAAATTGGTTTATTTTTCCCATCATCACTCATACCCTCAAGCTGGCATGAAGTGTAGGCTAAGAAGTATTGCACTGGTGACTGGGCGCTACAATCCCAGTGGAGAACATTAATGCATAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555834 lncRNA downstream 37441 5194993 ~ 5195332 (-) True G484402
TU555831 lncRNA downstream 72823 5255971 ~ 5256317 (-) False CI01000339_05254264_05259467
TU555837 lncRNA downstream 151572 5177153 ~ 5177568 (-) True G484405
TU554912 lncRNA downstream 418327 4904837 ~ 4910813 (-) True G483614
TU554758 lncRNA downstream 447397 4880528 ~ 4881743 (-) True G483480
TU555872 lncRNA upstream 30370 5360916 ~ 5361196 (-) False G484436
TU555874 lncRNA upstream 30370 5360916 ~ 5361470 (-) False G484436
TU555876 lncRNA upstream 30370 5360916 ~ 5361430 (-) True G484436
TU555901 lncRNA upstream 59223 5389769 ~ 5389979 (-) True G484452
TU555907 lncRNA upstream 74784 5405330 ~ 5405546 (-) True G484458
CI01000339_05286494_05309122.mRNA mRNA downstream 19798 5286050 ~ 5309342 (-) False CI01000339_05286494_05309122
CI01000339_05264265_05270065.mRNA mRNA downstream 59075 5264265 ~ 5270065 (-) False CI01000339_05264265_05270065
CI01000339_05254264_05259467.mRNA mRNA downstream 69486 5254264 ~ 5259654 (-) False CI01000339_05254264_05259467
CI01000339_05245266_05252163.mRNA mRNA downstream 76977 5244943 ~ 5252163 (-) True CI01000339_05245266_05252163
CI01000339_05240700_05241683.mRNA mRNA downstream 87457 5240318 ~ 5241683 (-) True CI01000339_05240700_05241683
CI01000339_05381662_05386593.mRNA mRNA upstream 50744 5381290 ~ 5386593 (-) True CI01000339_05381662_05386593
CI01000339_05387768_05396589.mRNA mRNA upstream 57149 5387695 ~ 5396589 (-) True CI01000339_05387768_05396589
CI01000339_05522752_05535461.mRNA mRNA upstream 192187 5522733 ~ 5535665 (-) False CI01000339_05522752_05535461
CI01000339_05584421_05594083.mRNA mRNA upstream 253593 5584139 ~ 5594083 (-) True CI01000339_05584421_05594083
CI01000339_05595943_05596416.mRNA mRNA upstream 264783 5595329 ~ 5596416 (-) True CI01000339_05595943_05596416
TU555826 other downstream 54870 5274086 ~ 5274270 (-) True G484394
TU554760 other downstream 475693 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 710415 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 715822 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 1158638 4125258 ~ 4170502 (-) True G483285
TU556180 other upstream 693186 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 923785 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 1670347 7000893 ~ 7004773 (-) True G484826

Expression Profile