RNA id: CI01000339_05821180_05830949.mRNA


Basic Information

Item Value
RNA id CI01000339_05821180_05830949.mRNA
length 2718
RNA type mRNA
GC content 0.47
exon number 9
gene id CI01000339_05821180_05830949
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5820877 ~ 5830949 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCCTGGTGTTGCCAGTCCAAATCCATGGAGTCTCTCTGAGTTACTGGGGCAGAAGAGCATTCTTGGAGTTGTAGTTCTGATTACATGGTTAGTACTGTTCCATCTTCTGGTGAATGTGTGGCTGCTGTGCATCTTCACCAGTCTGTTGGTAGTGCTGGGTGGATGGCTGGGATCTCGTGTCGCTTTGGATGCCAACAGCCTCCTTCATTTGGAGCACTTCCTGCCCTTGGGCGAGTCCCCTCAAGTTCACACTGCCTCAGAGAGTGAACAAAGACTGGACTGGGAAATTCAAAGTGCTGTTGACAAGGCTGTGCGGGACTTTGTGTCATCCTGGTACTGCAGTTCTGTTTCTAAGGGAGGGGATGAGTTCGAACGGGAAGTGAGGGACGCTATGCTGGAGGCAGCCGCTGAACTGAAGAGGAGGGCGAAGCAGGTGGACCGGAGAGCGCTGGCCCAGAGGGTTCTTGAGCTTTGCGGATGCCATCTGCAGAGCTTCACCCAAGCCAGGAAACTTCAACGAACACTGCAAGAAGAGTCCGACCAATCGCTTTCAAACTCACAAAAACTATGGAGGTTGTACAGTATAGCTGATTTGCCTCACCCTGCCCTGACGGGCCCAGCTAACCAGCTCTGCTACTCCAGAGCACTGGTAGATCTCCTCATGCACGTCCTTATTCCCAAATCTCACCTAGAAACACGAACAGGCCGCTACATGGTGGGAGAGCTCATCACATGCAATGTTCTTTTGCCCCTCGTGGCAAGAATATCCAGTCCAGATTGGTTAAACCAGACCATTGTAGATGTGTTCACTCAGTCCACTGATAAAGAAGAAACGAGTCCACAGCAAACACCTCCAGCAGACCTGGACGAATCCCATAGCAGCTTCTGGGACAGTGACTCTCCGATTACTTTAGACTGTCCTGAAACCTCCAGCATGCAGACGGCTTGGTCTGTATCCACAGCCCCCCTCCATGATTCCTCTGAAACAAGTTTCCACAGTCAGTGGTCCTCTGATGAAAATGTACATGCGAGGAGAAGTTCTAGCATACTTTTTCCAGAAAGAATTGCCCAAAATACAGCTGAACTTCTTAGATCTCCGTACCGCACTAGCCGCCTCTATAGACACACAGACTTTGACCTGGAATCACCCTCTTCGGATGAAAGGCAGATATCTAGTGAGTCTTTGAAACGAACAGACACAAATGCTGAGGACTTCTGTGACTGCATCTCTCCTTCAGACTTTTGTGGGCTGGTTTGTCTGGAGGAAGACACGTTGGGTCTTTTGGGGAAGTGTTTCGGGCAAAACATGATCGCTTCAGAGCCTCCTTCACGACTGGAGAGTACAATGGAAGAATCTCCGGTCCGACCACTGACTAACACATCAAACTCCATTCCCAGAAGCCTTGGCCTGGACTCATTAGTTTTTGAAAACTTAGGGAATCTAGAGGGACCGGTAACTATTCAGAACTTACAAATCACTGGGACCATCACAGCTAAAGAGCAAAGAAGCAACAGCACACATCCTTATACTCTTTACACTGTAAAGTTTGAAACTACTTCAGATTGCTCTGATCAGCCTGTCATGTATCATATGGTGAACAGGCGCTACACTGAGTTCCTCAATCTGCAGACCCGTTTGGAGGAAAGGCCAGATCTCAAGAAATTGATCAAAAATGTCAAAGGTCCAAAGAAACTCTTCCCAGACCTTCCCTTCAGCAACCTAGACACAGACAAAGTGGAAGCCAGGAGAAGCCAACTGGAATCATTCCTCAGGAAACTGTGCAGCATCCCAGAGGCAGCTAACAGTGAGGAGATGCAGGAGTTCCTTGCCCTCAACACTGATGCCACAGCAGCTTTCCAGAAGAAGCCGTCGAGTTCACGCATAGACAAGATGGTTGAGAACATAGTAGACACCCTGAAGACGGCGTTTCCACGCCCAGAGCCTCAGAGCCCCATAGAGGAAGGAGACCCACAAAGAAAGCCTCGTCTGAGATTCTCCAGTAAAATAGCCCCTACTCTTAATATCCCAAGCCTGCAGCCTAAAGTGACATACTCTTTCAGTGAACGCTGCTCAGTTCTTCGAGGTTTCTCGCTGTCAGATCTAGAGGGGTTTGTGGAGGAACAGGAAAAGCTGGTGGACGGTGGTGTCAGGAGTCATTTTGCAGGAGGAAGACGCATGAGAGAGCAGAGATCTGTAGAAAAGAGAGGAAGAGGAGCAGACACTGCCCTGGCAGATATCGCTCTGAATATCTTGTGTTTGCTGATGAAGGACCAGTGGAGCTGGCTCTGTACAGAAAACATCCAGAAGACCATTAGACTGCTCTTTGGCACTTTTATTGAAAGAGTCAATCAGTACATTTACAACAAAACGCTGATGATAACTATCAAAAATGAGTTAATTATCAAAATCTAACAATATATGAAAACCACATTTACATTAGATTGAGAAATTGTTGGGTTTTTACTCTGGTTTGGAAAATGTTAACAGAATCAAAATGCGAAAAAGACATGCCAGTGCTAGTGAATGCAAGTGAAGGTGTTTGCGTAAAGAGAAAAATAATGGGAATTGCAAAATTCTTTGTCTGCTTGTTGGGCTGTGAAGAGATTAAGGCATTTGCATGACTTTACATGGTTTGTAAAGGGCTATTAAGCATAATCGATGCAAGAGTGTGCATGTAAATGCATTCTGTTTTTTTGTAATATATTTATGAATAAA

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17930 SNX19; sorting nexin-19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU556047 lncRNA downstream 70922 5749380 ~ 5749955 (-) True G484587
TU556003 lncRNA downstream 241715 5578906 ~ 5579162 (-) True G484544
TU556000 lncRNA downstream 246313 5574126 ~ 5574564 (-) True G484541
TU555996 lncRNA downstream 254468 5566086 ~ 5566409 (-) True G484537
TU555995 lncRNA downstream 255217 5565368 ~ 5565660 (-) True G484536
TU556157 lncRNA upstream 5877 5836826 ~ 5837063 (-) True G484683
TU556158 lncRNA upstream 6624 5837573 ~ 5837789 (-) True G484684
TU556133 lncRNA upstream 27859 5858808 ~ 5861203 (-) True G484659
TU556179 lncRNA upstream 190879 6021828 ~ 6024822 (-) False G484702
TU556185 lncRNA upstream 194054 6025003 ~ 6027258 (-) True G484707
CI01000339_05808414_05810066.mRNA mRNA downstream 10226 5807441 ~ 5810651 (-) True CI01000339_05808414_05810066
CI01000339_05639652_05652636.mRNA mRNA downstream 168047 5637959 ~ 5652830 (-) True CI01000339_05639652_05652636
CI01000339_05627087_05634310.mRNA mRNA downstream 186512 5627087 ~ 5634365 (-) True CI01000339_05627087_05634310
CI01000339_05624136_05625750.mRNA mRNA downstream 195127 5623720 ~ 5625750 (-) True CI01000339_05624136_05625750
CI01000339_05595943_05596416.mRNA mRNA downstream 224461 5595329 ~ 5596416 (-) True CI01000339_05595943_05596416
CI01000339_05832439_05832960.mRNA mRNA upstream 1388 5832337 ~ 5833111 (-) True CI01000339_05832439_05832960
CI01000339_05853559_05857997.mRNA mRNA upstream 22346 5853295 ~ 5857997 (-) True CI01000339_05853559_05857997
CI01000339_05863897_05897316.mRNA mRNA upstream 31890 5862839 ~ 5897316 (-) True CI01000339_05863897_05897316
CI01000339_05917956_05923087.mRNA mRNA upstream 86951 5917900 ~ 5924012 (-) True CI01000339_05917956_05923087
CI01000339_05932828_05933256.mRNA mRNA upstream 101749 5932698 ~ 5933256 (-) True CI01000339_05932828_05933256
TU555826 other downstream 546607 5274086 ~ 5274270 (-) True G484394
TU554760 other downstream 967430 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 1202152 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 1207559 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 1650375 4125258 ~ 4170502 (-) True G483285
TU556180 other upstream 192783 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 423382 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 1169944 7000893 ~ 7004773 (-) True G484826

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060493 True 2651 mRNA 0.49 11 NC_007116.7 30351233 ~ 30380593 (-)