RNA id: CI01000339_05832439_05832960.mRNA


Basic Information

Item Value
RNA id CI01000339_05832439_05832960.mRNA
length 775
RNA type mRNA
GC content 0.45
exon number 1
gene id CI01000339_05832439_05832960
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5832337 ~ 5833111 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCTACGTGTTCAATCTTAGAATGGAGACGGAGGTGTCTTTCTGTGGCTGGAAAGCTGTTAAAGACCGCAGCAGGTCTCTGTCCGAGAACCAGGAACCGAAGTCAGGCCGTGTATACACAATGTTTCACGGCGCACATTTGACAAACGCGATGGCTATCATTAATAACGGATTTAAACCCTCTAAAGATGGAATGCTGGGCCCCGGGGTTTATGTCAGTCGTAACATCGATAAAGCCAAGTGTTACCCGCTCAATACTGACAAAAAAGACAAAGTCGTTTTCAAACTGCGGGTGTGTGTTGGAAAAGTTAAGAAAATAGACTGTGACAATCATCCTCTCCAGACATCGTGGCACAGCAATGGGTACGACTGCGCGTGGGTTCCGCCAAACAGCAAGATCTCCACCATCAAGTCTGGTCGCGAAGAGGACTGCGTGTGGGACCCCAGTCACATCAAGGTGATTGACGTGGCGTGCTGTGTGGATGACGATAAACGCAAGGAGCTTCGACGGCTGATTCGGAGTAAACTGAAAAACGAAGGCTGCGATCTTTGTCATCGCGACAATGCTGATGAAGACCATGATGTTCAGCTGTGCTGGGAGTGCAAGAAACAAATCTGCCCTTTTCAGGGAAAACACGTGTGCAAAAGCAGAAAGATCAAAGAAAGACTCTAAAATGTCAAGGCTAACTTAAGATCTGGATCTGTCTTTTATTAGTTTATTTTTTTGTTGTTTCTTTTAACCCTCTGTAATCATATTTAAGCCTACGGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU556047 lncRNA downstream 82382 5749380 ~ 5749955 (-) True G484587
TU556003 lncRNA downstream 253175 5578906 ~ 5579162 (-) True G484544
TU556000 lncRNA downstream 257773 5574126 ~ 5574564 (-) True G484541
TU555996 lncRNA downstream 265928 5566086 ~ 5566409 (-) True G484537
TU555995 lncRNA downstream 266677 5565368 ~ 5565660 (-) True G484536
TU556157 lncRNA upstream 3715 5836826 ~ 5837063 (-) True G484683
TU556158 lncRNA upstream 4462 5837573 ~ 5837789 (-) True G484684
TU556133 lncRNA upstream 25697 5858808 ~ 5861203 (-) True G484659
TU556179 lncRNA upstream 188717 6021828 ~ 6024822 (-) False G484702
TU556185 lncRNA upstream 191892 6025003 ~ 6027258 (-) True G484707
CI01000339_05821180_05830949.mRNA mRNA downstream 1388 5820877 ~ 5830949 (-) True CI01000339_05821180_05830949
CI01000339_05808414_05810066.mRNA mRNA downstream 21686 5807441 ~ 5810651 (-) True CI01000339_05808414_05810066
CI01000339_05639652_05652636.mRNA mRNA downstream 179507 5637959 ~ 5652830 (-) True CI01000339_05639652_05652636
CI01000339_05627087_05634310.mRNA mRNA downstream 197972 5627087 ~ 5634365 (-) True CI01000339_05627087_05634310
CI01000339_05624136_05625750.mRNA mRNA downstream 206587 5623720 ~ 5625750 (-) True CI01000339_05624136_05625750
CI01000339_05853559_05857997.mRNA mRNA upstream 20184 5853295 ~ 5857997 (-) True CI01000339_05853559_05857997
CI01000339_05863897_05897316.mRNA mRNA upstream 29728 5862839 ~ 5897316 (-) True CI01000339_05863897_05897316
CI01000339_05917956_05923087.mRNA mRNA upstream 84789 5917900 ~ 5924012 (-) True CI01000339_05917956_05923087
CI01000339_05932828_05933256.mRNA mRNA upstream 99587 5932698 ~ 5933256 (-) True CI01000339_05932828_05933256
CI01000339_05935601_05965650.mRNA mRNA upstream 102249 5935360 ~ 5965650 (-) True CI01000339_05935601_05965650
TU555826 other downstream 558067 5274086 ~ 5274270 (-) True G484394
TU554760 other downstream 978890 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 1213612 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 1219019 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 1661835 4125258 ~ 4170502 (-) True G483285
TU556180 other upstream 190621 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 421220 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 1167782 7000893 ~ 7004773 (-) True G484826

Expression Profile