RNA id: TCONS_00001613


Basic Information

Item Value
RNA id TCONS_00001613
length 453
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_001014
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9132335 ~ 9134045 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGGGACGGTTGAGCGTGGCAAAATATTCCGCAAGTCTTGTCAGATAAGTTTACAGGATGTCGGAGGAGATTCTCCATAACGAGGACAAAGAGACTCTGAGGAGAAGACTGGAGCAGTTGAAGCAAGAATATGAAAGGACGGCGCAAAGACTACAGagAGCAGAGCATCATGATGCCATTCGCAGACACAGACTTACACAGATTGAGTTGTCACAGACTTCTGAGCCGTCCTCTGCAGCTTCTTCCATGTCAACCTCAGATCATTTTGAAAACCATCAGAATCTGCAATTACAAACAAACAGAAACATCTCAGATTGTTCTGCTGTTGAGAAAACCCCTGCCTTCCAATTGCAACTAGCTGAGATTACATCTACACCGTCTTTGTACTCCCCTGCATGCAAGCGAAGCCCTGCTCACCGGCTCCGTTCAAAACGCAGTCGACTGCGCCTACA

Function

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-090313-43 Predicted to enable DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be active in nucleoplasm. Is expressed in brain; eye; immature eye; lens; and pectoral fin fold. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group N; breast cancer; and pancreatic cancer. Orthologous to human PALB2 (partner and localizer of BRCA2).

Ensembl:

ensembl_id ENSDART00000142132

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003338 lncRNA downstream 49563 9081842 ~ 9082772 (-) True XLOC_001010
TCONS_00003337 lncRNA downstream 151664 8978905 ~ 8980671 (-) False XLOC_001009
TCONS_00001604 lncRNA downstream 154372 8974500 ~ 8977963 (-) True XLOC_001008
TCONS_00003336 lncRNA downstream 154375 8974500 ~ 8977960 (-) False XLOC_001008
TCONS_00001597 lncRNA downstream 479687 8650109 ~ 8652648 (-) False XLOC_001004
TCONS_00003339 lncRNA upstream 4593 9138638 ~ 9139160 (-) True XLOC_001015
TCONS_00001614 lncRNA upstream 23265 9157310 ~ 9162637 (-) True XLOC_001016
TCONS_00001626 lncRNA upstream 174226 9308271 ~ 9314795 (-) False XLOC_001023
TCONS_00001627 lncRNA upstream 180463 9314508 ~ 9321931 (-) True XLOC_001023
TCONS_00003340 lncRNA upstream 286779 9420824 ~ 9422275 (-) True XLOC_001024
TCONS_00001612 mRNA downstream 2199 9125023 ~ 9130136 (-) True XLOC_001013
TCONS_00001611 mRNA downstream 8870 9118100 ~ 9123465 (-) True XLOC_001012
TCONS_00001609 mRNA downstream 17301 9113630 ~ 9115034 (-) True XLOC_001011
TCONS_00001607 mRNA downstream 17399 9100473 ~ 9114936 (-) False XLOC_001011
TCONS_00001608 mRNA downstream 22636 9105039 ~ 9109699 (-) False XLOC_001011
TCONS_00001615 mRNA upstream 35762 9169807 ~ 9195629 (-) False XLOC_001017
TCONS_00001616 mRNA upstream 35762 9169807 ~ 9195760 (-) True XLOC_001017
TCONS_00001618 mRNA upstream 93036 9227081 ~ 9228007 (-) False XLOC_001019
TCONS_00001619 mRNA upstream 93040 9227085 ~ 9228007 (-) False XLOC_001019
TCONS_00001620 mRNA upstream 93195 9227240 ~ 9227804 (-) True XLOC_001019
TCONS_00001610 other downstream 13664 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001595 other downstream 479680 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001587 other downstream 579037 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001570 other downstream 1156566 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 1212129 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001617 other upstream 63814 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 325965 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001646 other upstream 606757 9740802 ~ 9816875 (-) True XLOC_001029
TCONS_00001656 other upstream 929456 10063501 ~ 10064568 (-) False XLOC_001036
TCONS_00001657 other upstream 929829 10063874 ~ 10068533 (-) False XLOC_001036

Expression Profile

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