RNA id: CI01000339_06983086_06984033.mRNA


Basic Information

Item Value
RNA id CI01000339_06983086_06984033.mRNA
length 938
RNA type mRNA
GC content 0.37
exon number 3
gene id CI01000339_06983086_06984033
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 6982532 ~ 6984033 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGTAGCTGGGACCCTCTTCAGGAGAGAAACCTTTTCAACCAAAACACTGACCTCCCCTGTTTCCTTGAACCAGATGAGCTCTTTGTGCATGGAGATTCCTTCTAAATCTGAAGGACGGGTTTCTGAATCTGTGTGTGAACAAATGAAAGGACCGCAAAACTGGAAAGTCTGTCTAGATGTCAGTCCATTTTCTCCAAAGGATATAAGCATCAAAACCAAGGAGGGGCTTCCAGCTGACTTAGACCTAAAACTAATCAGCTCCATGCTGTCTCCAGATGGTATTCTCTCAGTTGAGGTCCCATTACCTGGCTCTAATATCAGTCTCCCTGGAGAGATTGTCATCCCTGTTCACATGATGGACAAACAGTTCCCTGCAAAGTAACATATAGACCTATTCATATGCCCAATATGTTAAAAGTAATGAACGTGTTTTCCTAACTTTTCATTTTTGATGGCTAACCTTAGAAGCATTTGTAAATACCAGTATTGCAAGAGAATATTTATCATATTTTGAAGCATTACTAAATGACAAACATTACTGTTCAGACAGTAATATGCTAAATAGTTAAGCTCTGCTGTTACTTTGGTTTAAATTATATGTAATACATAATTTGTGCTTTATATGTATAATAATTCGGTTGCACTTTAGAGTATGTGCACTTACATGTACTTACAGTGTACTACCTAAGAAAGTACTGGTTAATATAAGGTAACTACATGGTTTAAGGTTAGGTTTAGGGGGTAGGTTCAGGGCTAGTACCTAGTTATTACCCATTTATTATAATAAGTACATAGTATGTACATGGGGAACATGACTGTAAAATAAAGTGCTACCAAGAATTCTTCTAAGATGATCAATCCTATGTAACCATTAAGTACTGACGGACTAAAGAGAGATCAGATTTTCCAGTTCACTCTTTTTCAGGCTAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU556453 lncRNA downstream 165469 6815204 ~ 6817063 (-) True G484943
TU556363 lncRNA downstream 248353 6733772 ~ 6734179 (-) True G484870
TU556315 lncRNA downstream 325014 6657483 ~ 6657518 (-) True G484825
TU556285 lncRNA downstream 490615 6491716 ~ 6491917 (-) True G484804
TU556282 lncRNA downstream 497676 6484622 ~ 6484856 (-) True G484801
TU556364 lncRNA upstream 13778 6997811 ~ 6998975 (-) True G484871
TU556316 lncRNA upstream 16860 7000893 ~ 7004773 (-) False G484826
TU556318 lncRNA upstream 16860 7000893 ~ 7004773 (-) False G484826
TU556511 lncRNA upstream 104988 7089021 ~ 7089385 (-) True G484991
TU556539 lncRNA upstream 139792 7123825 ~ 7124186 (-) True G485000
CI01000339_06968980_06974513.mRNA mRNA downstream 8019 6968980 ~ 6974513 (-) True CI01000339_06968980_06974513
CI01000339_06946465_06948712.mRNA mRNA downstream 33204 6946401 ~ 6949328 (-) True CI01000339_06946465_06948712
CI01000339_06917949_06919576.mRNA mRNA downstream 62956 6917195 ~ 6919576 (-) True CI01000339_06917949_06919576
CI01000339_06883625_06889375.mRNA mRNA downstream 92033 6883055 ~ 6890499 (-) True CI01000339_06883625_06889375
CI01000339_06867675_06873093.mRNA mRNA downstream 109439 6867205 ~ 6873093 (-) True CI01000339_06867675_06873093
CI01000339_06985199_06992207.mRNA mRNA upstream 1070 6985103 ~ 6992425 (-) True CI01000339_06985199_06992207
CI01000339_07009961_07010749.mRNA mRNA upstream 25861 7009894 ~ 7011602 (-) True CI01000339_07009961_07010749
CI01000339_07023718_07029434.mRNA mRNA upstream 38219 7022252 ~ 7029434 (-) True CI01000339_07023718_07029434
CI01000339_07035942_07039033.mRNA mRNA upstream 51909 7035942 ~ 7039033 (-) True CI01000339_07035942_07039033
CI01000339_07062220_07073959.mRNA mRNA upstream 76848 7060881 ~ 7073959 (-) True CI01000339_07062220_07073959
TU556119 other downstream 726420 6254331 ~ 6256112 (-) True G484645
TU556180 other downstream 957710 6023732 ~ 6024822 (-) True G484702
TU555826 other downstream 1708262 5274086 ~ 5274270 (-) True G484394
TU554760 other downstream 2129085 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 2363807 4618112 ~ 4618725 (-) True G483512
TU556319 other upstream 16860 7000893 ~ 7004773 (-) True G484826

Expression Profile