RNA id: TU551991


Basic Information

Item Value
RNA id TU551991
length 824
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G481032
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 385660 ~ 386483 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATTTAGTTGTGATAACACTTCACAAAAGCCCAGACCGGTTTGAGCTGCCTCACACCAACCTCAGAGCATCTTCTGACACACACAGCAGCAGCTTAGGAGTTTCAGACTGTAAGTCCAGATCCGATTTTTGTGCATATTTGAAATCCAGTCAGATTTAGCAAGTGTGAACAGCAAAAAATCACATGAAATGTCAATCACAAATCCGTTTCAAGCTACATTCGTATGTGGTTTGAAATCCTAATTAAATCACATTTCTGGAAATCTGTTTTAGTCTGACTGATCTGATCGGATTTTGCTTGGTTTATGCAACTTTCTCATGCCATGTAAAACATAAACATCAGACGTCGTTGTAATAGGAAATATGCTGAAAGTCGCTGCAGAAACAAGGTTGTGTTGGTGTAGAGTGCTGGACGAGCAGAAAATGACTATGTATTGGAGAATTGGAGACGTGTTTTGAGACCGACAGAGATGATAGCCCAGAAAACGTAGTAGTCCAGCGGCTACACACTGTCATGTTGTACATAAGACAACATGTGTCTTGCAAACCCCTCCATGTTGCTGGTGGTGGTGGTGGTGTTGTTGTTTTTGGCATATGCCTACCAACGCAATATCATTACCATAGAAACCAATGCAGATATTCAGGAAAACAAAAGAGCGCACATGCATCTGATCTGAACAATTGCAATACACAGTATGGACAGTCAATAATATAGACCAGATTCCAATCGGATACACAAATAATTGGATTTGGACTGGCAGTGATAACGTAGCCTTACTTGCACTCATTCTCTTTTTTTCCTATGGTACCTAATCTTTTTCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552061 lncRNA downstream 54913 330248 ~ 330747 (-) True G481102
TU551975 lncRNA downstream 172173 211827 ~ 213487 (-) True G481020
TU552034 lncRNA downstream 225866 159472 ~ 159794 (-) True G481075
TU551931 lncRNA downstream 316216 43865 ~ 69444 (-) True G480981
TU551932 lncRNA downstream 343184 42149 ~ 42476 (-) True G480982
TU552083 lncRNA upstream 88044 474527 ~ 475730 (-) True G481124
TU552019 lncRNA upstream 170242 556725 ~ 557127 (-) True G481060
TU551993 lncRNA upstream 172896 559379 ~ 563915 (-) True G481034
TU552010 lncRNA upstream 183604 570087 ~ 571491 (-) True G481051
TU551996 lncRNA upstream 189877 576360 ~ 578178 (-) True G481037
CI01000339_00376587_00383412.mRNA mRNA downstream 2248 376296 ~ 383412 (-) True CI01000339_00376587_00383412
CI01000339_00306275_00328002.mRNA mRNA downstream 57209 305862 ~ 328451 (-) True CI01000339_00306275_00328002
CI01000339_00269232_00284617.mRNA mRNA downstream 100792 269227 ~ 284868 (-) True CI01000339_00269232_00284617
CI01000339_00233236_00247333.mRNA mRNA downstream 138027 233166 ~ 247633 (-) True CI01000339_00233236_00247333
CI01000339_00199870_00204573.mRNA mRNA downstream 181024 199639 ~ 204636 (-) False CI01000339_00199870_00204573
CI01000339_00387189_00393407.mRNA mRNA upstream 530 387013 ~ 393407 (-) True CI01000339_00387189_00393407
CI01000339_00397469_00403594.mRNA mRNA upstream 10986 397469 ~ 403594 (-) True CI01000339_00397469_00403594
CI01000339_00403686_00405566.mRNA mRNA upstream 17203 403686 ~ 405749 (-) True CI01000339_00403686_00405566
CI01000339_00416204_00453589.mRNA mRNA upstream 28968 415451 ~ 453589 (-) True CI01000339_00416204_00453589
CI01000339_00481035_00496923.mRNA mRNA upstream 94021 480504 ~ 497237 (-) True CI01000339_00481035_00496923
TU551918 other downstream 295463 85093 ~ 90197 (-) True G480969
TU552123 other upstream 562334 951313 ~ 953434 (-) True G481161
TU552119 other upstream 727646 1114129 ~ 1116148 (-) True G481157
TU552634 other upstream 1185054 1571537 ~ 1573962 (-) True G481610
TU552698 other upstream 1337287 1723770 ~ 1733019 (-) False G481662
TU552699 other upstream 1337287 1723770 ~ 1733019 (-) True G481662

Expression Profile