RNA id: TCONS_00022064


Basic Information

Item Value
RNA id TCONS_00022064
length 1171
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id XLOC_010356
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 66537 ~ 67707 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacacacacacacacacacacacacacactgctttggCTTAGAAGAGCCAGCTGAATGTGTTGACGTGTGTTTGACAGCACGCTGCTGTAGAGCAGGTTTCTCCTCACTGATCAGCATCATTGATCACTGATCAGCATCTGTCTGCTGTTCTCAGGTCAGTGTTCTCTCAGTGTGAGCGCGGGTCTTCAGTCCACACGCGCTAATGTTCTGCTGAATGTGAAGGGGCGGGGCTTCTGTGCAGGCGGGCGGTATTTGTCACAGTAAACACGCCCCTAACTGCTGAACTCGAGCGGCGGCAGCGGCAGATCTTCAGTCCCGGCTGGAGGACGAGCAGCGCgggctgtctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaaatataaCTATTGTATACATTAGCATTTACCTATTTTTATGTCTATTAttccatttttgttttaatatgttctttctctctgtgtttctCTGTGGATTGTGTCTGATATTCATGTTGGTTTGCACTACTGTCTGCCTTGTCTGTACGCAGCGACACTGCACTGATTAGGCAATACTAATGTACAGATAtctgtcatgccaataaagcacctcaaacaAATGTGAAaggtgaatgagagagagagagagagtgtgtgtttttgtgtgtgtgtgttctccagcTGTGTGCTGCTGTGCCGCTAGGTGTCGCAGTGGAGCCGGGTTTGTTTCTAACCCAACACACACTGCAATAGTCAGAGTTGCATAACGACACTCGGCGGTTTGTCTGACATCCTTGTTCTTGTTTACCCGAAACACAGGAGCAGCACAATCATACAACGCTGAaccagtaacacacacacacacagactcccACAGCGGTGTGTGTTCATGAACAGATTATTGAGGAAAAGTtctcatattttattaatattatatcatGACACATTTAACAATtgtaactataataaactaataataagaaaaatctattattaatattattattacgactataattactgtattattaaatgtgtgtgtttgtgcagtaaCTGTTGAACTGATGGACATTAAAACATATAGATATAGACacgtgtatatttatattttctgtcttttactgtataatgattctgagtatatattaatattattgtatat

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0021536 diencephalon development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0009611 response to wounding biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0060173 limb development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0040011 locomotion biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007420 brain development biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0030900 forebrain development biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022065 lncRNA upstream 105857 173564 ~ 177863 (-) False XLOC_010357
TCONS_00022067 lncRNA upstream 108687 176394 ~ 177863 (-) False XLOC_010357
TCONS_00022066 lncRNA upstream 108687 176394 ~ 177863 (-) True XLOC_010357
TCONS_00021773 lncRNA upstream 136418 204125 ~ 206259 (-) True XLOC_010358
TCONS_00021774 lncRNA upstream 160113 227820 ~ 239273 (-) True XLOC_010359
TCONS_00020402 mRNA upstream 180532 248239 ~ 263658 (-) True XLOC_010360
TCONS_00020403 mRNA upstream 210082 277789 ~ 280255 (-) False XLOC_010361
TCONS_00020404 mRNA upstream 210082 277789 ~ 280835 (-) True XLOC_010361
TCONS_00020405 mRNA upstream 311059 378766 ~ 383664 (-) False XLOC_010365
TCONS_00020407 mRNA upstream 488039 555746 ~ 563732 (-) False XLOC_010367
TCONS_00020422 other upstream 2570652 2638359 ~ 2641494 (-) False XLOC_010377
TCONS_00020424 other upstream 2667969 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020433 other upstream 4142770 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020438 other upstream 4459774 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020445 other upstream 4547954 4615661 ~ 4619765 (-) False XLOC_010398

Expression Profile

//