RNA id: TCONS_00022065


Basic Information

Item Value
RNA id TCONS_00022065
length 1777
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_010357
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 173564 ~ 177863 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAAGCACAACATAGTGTGTTGTTTTCAGGAataaatgaagagagtttttccttaaacaagcagaataatccaGTTCTAGCTTTGACAACATTACtctgtcagattattctgcttgttttaaggtgaaactctcttcattttgattaattatttctgaaaacaagactagaatgttttgcttgtctgcttaatgcttcttgatttaacagtttgtagatatttagactagaaacaaggcagACACTCGTAATGCTTAATGAACAATCACACAAGACTCCAGTCACACATGAAGGTCAGGATAGGATGCCAGAACTCTATTCCAGGTCATGAAGGGACATGCATCTTCAGCAGGAGCGGTGTTATGTCCAGAAACAGTCGTCTAAAAATGGTGTTTCTCCAATCAAACGTCCTTCCAGCAGCCATCCGCAGGGTGTTATGGTGTTTTACTCCAGCGTCCCGGACACGACTGATCACATCCATCACAGTGTTCCTCCAATCACCATTTGTTTTCAGACGGAGAGGCTCACAGTTTAGTTTCAGGACAGCAGATTTTCACTGTAGAGCACACTATACCTGCTGCTCTAAACGGGAAGCAGACATCACAGCAGGACTGTACATCAggtaatagagACAGCAGGATGGCTGATAGTGTCCTGTATTGAATATGTGTGAGCACAGCTTCTGAAGGAGTCGAAGCTTTCAGCGGAGCGTCTGCAGATCCACAGGAGCTCCAGCAGATTGGCAGGTTATTGTGTGTGAGTCAAGGCTGCGCCACACGCTTCACACAATACCCATTCACGCTGCAGATCCGCCAttgacacgcagacacacacatttgGACCGGCTTTTTCTTCCCTGCCGGTTTTGTCCGCCGCTGATTGGATTTATGAAATAGCGCAGCACATCAAAGCATGCACATATTTTAGCTTCCAGTGACAAAAGATCTCCGCTCGGGGACATAAAGGCAGCGAATCAGACGTGCCGCCGCATCTGTTGTTTCCCATACACTCCTACATTTGAGCAGATCATTTTGTGCACTCAAGGTTTGCTTTTTACCACTTGACGCATTCACCGAGAGCTGAACCGCTGACCTTGGAGCCTCTGCCTCGCTCTATTGTTGGAACAAATCCATGCTCAGGTGCTTTCAAAAGCCCGTTCACCTAAGAGATTTGGAAATGTGGCTTTGCATCAAATCCTTCAGACTGCAGCCATTCTCTAATAAATGCACAACACAGACGCACGAATGGATTAAAATGCAGCTGATCAGTCAGTTCAGACAGAAGCATGCTGTATGGATGTGTTTGTAGATGATGTTAGGCTCTATTTAAACACATTCCACTGAAGTTTGAAACACTAATGTTTCTGTACAACAAGCTGACATTAGTTTATCCATGACATGAACTAgcaaacacattcatacactgcaataaatgctgtttttacttTATCATGTCTGATCCAAATACCTACTGTCTCTGAAATCAAGACGCATTTTCCAGACCGAGCATAGAGACCCTTTTCACACTTGCGGGTTTTCCAGTAGTGGACATTGTCTGAGGGAAAATTTGGAGAGTAGTGAATGGGGGagtacaacaaatactttttaaaattttttttaatctttttgctaaaataatgacagaaaatctCCCCGATGATGTTATAAAGACTGTCAGGAAAAGGAAAGACATTGTGTGAGattgatgacggcagccagacgGAAGAATAACGCCAAATTTGCTGTCCTGTCCCACAGACGCTGTAGAAACCCCTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022064 lncRNA downstream 105857 66537 ~ 67707 (-) True XLOC_010356
TCONS_00021773 lncRNA upstream 26262 204125 ~ 206259 (-) True XLOC_010358
TCONS_00021774 lncRNA upstream 49957 227820 ~ 239273 (-) True XLOC_010359
TCONS_00022068 lncRNA upstream 124892 302755 ~ 313553 (-) True XLOC_010362
TCONS_00022069 lncRNA upstream 168400 346263 ~ 353780 (-) True XLOC_010363
TCONS_00022070 lncRNA upstream 176983 354846 ~ 365399 (-) False XLOC_010364
TCONS_00020402 mRNA upstream 70376 248239 ~ 263658 (-) True XLOC_010360
TCONS_00020403 mRNA upstream 99926 277789 ~ 280255 (-) False XLOC_010361
TCONS_00020404 mRNA upstream 99926 277789 ~ 280835 (-) True XLOC_010361
TCONS_00020405 mRNA upstream 200903 378766 ~ 383664 (-) False XLOC_010365
TCONS_00020407 mRNA upstream 377883 555746 ~ 563732 (-) False XLOC_010367
TCONS_00020422 other upstream 2460496 2638359 ~ 2641494 (-) False XLOC_010377
TCONS_00020424 other upstream 2557813 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020433 other upstream 4032614 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020438 other upstream 4349618 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020445 other upstream 4437798 4615661 ~ 4619765 (-) False XLOC_010398

Expression Profile

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