RNA id: TCONS_00022070


Basic Information

Item Value
RNA id TCONS_00022070
length 5945
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_010364
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 354846 ~ 367144 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTTTTTGAAACATACTATGAAAAACAGCAGTATTGTCTCAGTTGTTTATATTGTTGCAGttatcatgttaccatagcaactgcagaatcaccacaacagcgCATTTACtactgttgttgtgttaccatggcaactgcaGAATTACCACTACAGAGCGTTTACTATTGTAgttgtgtcaccatagcaactgtagagtcaccacaacagaccatttactatagttgttgtgttaccttgGCAACTGCATAATCACCAAACTATGGTATttgtgttatcatagcaactgtagaatcaccacaacagatagatcactataattgttgtgttaccatggcaattGCATAACCACCACAATAAATCAATtacaatagttgttgtgttaccatagcaactgcaaaaTCACCACTACAGAGCGATTACTAGAGTAattgtgtcaccatagcaactgtagtcaccacaacagatcatttactatagttgttgtgttaccttgGCAACTGCATAATCGCCACACTATAGTATttgtgttatcatagcaactgtagaatcaccacaacagatgaatcactgtggttgttgtgttaccatggcaactgcaTAATCACCACAATAAATCAATCACTATAGTAGTTGTGgtaccatagcaactgttgaatcCCCACAACATagcaattactatagttgtcatgttGCCTTagtgactgtagaatcaccacaacagatcaattacctTAGTTGtagcgttaccatagcaactttagaatcacCACTAGATTGATTGAAGTGCTTGACTATATAGTGGGACTCAAAAACACTGTGACGTATCAGTTTTCCCCTATAGAATATAACTTTGTACCTGATGACTGTGTCTTTTACACAAGTCTGAATAAACGCAGGCCTGCATGTTGTCCATCAGACAGCGATGCGTCACGTGGTGTTTCCTGATGTTTTCTGCAGTGTGTCTCTGCTTGGTTGGCTCTGTTCGCTCTCATTGTTCCATCCTTAAATAATAGAAGAGCCGTGTGTTTTCTGCATCCATTTTTGTCATGCTCAGTTTCACTAAAAAATGGAGCTGGAGCCGCACAGATGTGTCGTGTAAACCAACATGCTTCTCTCCGCGACACAATTAGTTTCCATCGAATGCTATTGATCTTTTCCTGCTTCAATTATAATGCTGTGGCGTGGAGCACATGAATGTTTGTAGTCATTAGCCGGACTCTTTGTTGTGTCACCAGCAGCAATTAAATCCAGCCGATGGGCCTTTTCCCGGAAACTTCCATGTGGAACCTCTGGAATCGGGACACGCATGGCTTCATTGGCCCACTCGGGACAATCTCGTCtatgaaataaaaatgactcTCTTTGCACAACTCGCTGCCTTCCAAAATGGGAGAATTTGCCTGATCTTCTGGAAAATAGCGAGATATTATTAGTGAAGTATAGAGGAGAACACTGTGTTTGATGGCACACACAAAACACTGGccgtctgtctgtcagtctgtttgCTGATTCGCAAAAGCAAAATAGGATTTGTATTGACTCGTCAGATTTGTTCATTCACACCCAACTCAAATTTGTTCTGTCAGTCTGTGGCGCTggaaaacacacaacaacaaaccTGCTCATTATTCATCCTCCATATACATTAGCAGACACAGAGGAGCAAATCTACACAACAATGTCATTAGAGTGACACAATCGCAGGATGTCAGCACTATGGAGAGAGCACAGGTGAGAACCGTATTTCTACAACAACATTGGAAGACATTGCAGAGAGAACGAGGGAGGTTGAGAGGACTTCATGGCCAAAGAAGACAAACACTTTCAAATGAAATCCGAGCAACCTTAGTAGATCATGTCGTCAAGCATGGCCTGACAATGCGTGAGAGTGCAGACAAACCTGAGTGGCTTTACTGTCGCCTCTGTCATCCGGACCTTTAGACTGGAGAACAGACGGTCGTCTCTGAGTTGTGTTTGTGGAGTGTGACGGCTCCGGCTGAGCGGACTCCAGCCCTCAGACTGAACATTACAGCACCGCGGCTCCTCCAGAACTCAGGTGAGCCCATTACAGCACCTGTGGGCCCTTTAATAGACGGGACGGGACGGCCTGTCAGAGCCCATGATGCCGTCCGGACGCTCAATCTCCCGGCGGTTTCACTCCAGGGCTCCTGACAGCTCGGCTGGCGCTGCACTCCATGTACTGCAGCATGTTTGTATTTGTTGTTGAGTTGTTGTGGGCATTTTTCCTCTGTTCCTATGAATGAAAACATCCGGCTGTCACACACATCAGACGGACGGCTCGTGTTCGGCCAGCGGAGAGTCTGACACGCTTCAAAACTCCGGCCCAAACACAGCCGCTCAAGATCAAGACTCCTGCCTCTCGGACAGAACTGCACACTTTCCTCCGTTGGTATTGTACATTATGTGCGGCGGTGTTGTCCGTGTAATCGACTGAACGGAGAATTGAGCCGAACCGTTTACATCCACATGAAACCAGCCAGTGTTGGAGCTGATGCACTATGAGCTACTCTCAGAACAATCATTGATCAAACTATTTATGtagaatgagctgaaacaacacaatttagcCCTGATTCTGTTCGTGtgccccttccccttggcccttgaaacagagtgcgAAGAGGAAGGGCTTCAGAAGTTTCCTCTATGAAATGAGACAGCATTATGCCATCACcagctcttgcttcatatgagatggATGACGGCGACCGCTGTGGTTATTCCAGTCGTGTTATTGTTTGGTATTCATCTTctggaaatcactgaaggcaacaataaCATGTTATTATGAGGGTATAATGTGGCAGTACACTCTGAACTGTACACCATTTACATCATATTCGTCTatgtcaggggttcccaaacttttcagcctgcgaccccaaaaataacaatgccagagACTCGCAACCCCCAAACTCCTCGGAGGTGGTCATAAGGtcgcactttattttaatggtctgtttgttgaatttaagttacattacaagagtgtactcacactatgcacaGTTAAGATGAACTCgaccaaagcacgcttgtcccctctcctGTCTCCCTGACAGccagcactcacattacatttgggcacgcttacgtcatcgatgacgctctgttcagtgagaagtacattccgctgtggcgaccacagataaATAACAggctaagccgaagaaaaatgaatgaatgaacttttttaAAGTATCAGCAGTGACTGTCCGCTCTCCTGCGCATGTGTTGAGAGAAATGCTGCAGGCTTTAATCTAATGAACACACATTAAACCTCGTAACATcattaatagggtatatgccgagtgTGTTTCCAATACTGATTAACCTTCCGgttgacctgttattgtgaattttttttctattttattcggttccttttacagcatagatgttgtaatgtaattaaattaatattattattattattattattcagttaaacagactttggaaTTCAtgtagttgttcaagcgtaaaacgagacaaaaagccgtttactcgcacgcgcccatcAGAATCTGCAGGCtggcgcagaagctccattgaataaactggagtaaaataaatgctccTATTATAAAGACACAGCGGGgggaatgtaatttaatgcagtgctttttgtacaatctgagacccacttaatatcggatatcactcagccagtggagatcgctgatgtttaaagaaaactgacctcAAATGCGCTGATTTTTGCATTACATACAGTTGagcggaagcgcttaacccaggttactggcaaattaaaagtcctattagcatgcttcagcatataccctataggCTGCTGAGTGACTGATgctgttggtttgcactgagtctgATTTCTGACTCAAAGCGCTTGCTAGTTCTTTTATTTGctagatctgaggtgaactatctgctgctgctttcagtacaacacctgaaatgtgtttaaacactgtagtttatgctgttgttttggTCACAGAAATAGAAATGTTCTCTAAATTAGACATTTGGCACAGATAGATATGACCAAAACTCTTTTGACatggaaaaaacagcttaaatcacGTCATGCTGCATGTATTCAGGACATGTGTAGTATAAGCCTTATGTGATCACAAAACCCAAACACACAGGCCTCAATCTGCAGTTTAGAGAACAACACACGGCTAAACTGAACGTCTGATGTGTCGGGACGGCGCTGAAAGGTTTGAACACTTTTGAATGACCAGCGCTGATGATTCCTTTATCAGTTTAACAGAGGAAAATGTGCTCATCTCTGGCAGATCAGAGatgcaaacacaacacacacacacactcacacagggcTCATCTGCTGTTCTGGAGGACGATGAGACAAAAACATGAGCGCATTCTCAATGCTGGAGTAGATCAACAATGAAGAAGTCCACCTCTGAGGACACTTTATTCACTGTAATCATGACACGGACGCACTGAGACTCCCGATAAACCACGCAGGGTTATTATTGAGGCTGAAGCTGGAAAAGCTGGAGATTATGGAGATTATACAGCCGCCACCTGATACTACAACATGCCAACACAACGCCTACATACAGTACGACGCTCAGCCAGGGTTTCCCTCATCAAAAAGATGAATGGATTTATATAATATTCTAGTTTTTGCATTAATTAAAACGGTTTTGCTTCATTGTCAgatcatttagcttgttttaaataaccGGACCTggttttgactcattatttctgaagtCTATGTCATTTGCTCATCTTGAATTCAAGATATTTTGTACTATGAAGAAGGCAAAAACTCCCTGCATTGTTTGCATATGCAATAATCCAGCATTTACAGTATCATGAAGAAGTTATTCTCATGTAGCCATCCAAACAAACAAACCCCTACACACAGTAGGACGCTCAGCGAGGATTTTCCTGGAGAAAAGTTGAATGGATTTACATCTGTGATCACGGGAGCTTCGGCCAGATCGCATTTATTACCCGAACCCTTCCTCTCCTTTGTTTTTCAGCAAAAAGCCGCGTTTTGTGTTGGACACAATTGCAGGATTCCATCAGTGGGAGTTTGTGACGACATGTAACCGGACCCCCATCTGATCCTCGCTCCCCCGGCGGCTAAGCTGTTTGTGTTTCTCATTCAGCGGTTACACAGGCCagcaagtgtaaacacagcagtggCTTTTTTAATTGTGCAGTTGCTAGTGTCGTTCCTCTGTCAAATTAACATGCGCTCTCTGCCAGATTAGAGCAGGCCGACACCACACGGCTTGTCGCTGGATCAGCTTAAACTTTGCACAGAGAGTGTGTGCGGAAGAGCGATAACACACTGCTGTTTGCCATGCGAGGGCTTTTGGAGTCTTCGCTGCCCGCTGGTCCTCCACTTTAGcagagaaacagacagaaaagcTGCTGTGTTGAGTCTTATCTGCGTCTGGAGACGTCTGAGTGACACTCATGCTGTAAAACTAGAGGTTAATGAGATTATTGCTGATCTGCGGACGCAGCGAgcgtactgtgtgtgtgtgcaccgtATCTGTCTGAGGTATCAGACGCGCATCTGGAGATCGGGAATATAGCATGGGTTAGGGAGGATGGCAGATTTTTGGCCGAGTATCCGTCATGTTTATTTCATATTCTAAAGCTCTGGCTCACTGTCTGTTGAGGATGTTTATAAATCACAGTCATTATGAGAGAAATTCCACTGTAAAATCAGGAAGATAGATGAATATATTCTGTACTTTTACTGAAAAagccaaaaaagagaaaacataataatatattaatatagttgatgtgaagtttgatttaaatcctacttGGCACCTCGTATATACCAAATGTCATAGCCAGTACAAGTACGTTTGTTAAATAGCCTACAGTGTAAAAACTTATTTCCCGCAGCTTgggtaaaacataaaataacggccg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022069 lncRNA downstream 1066 346263 ~ 353780 (-) True XLOC_010363
TCONS_00022068 lncRNA downstream 41293 302755 ~ 313553 (-) True XLOC_010362
TCONS_00021774 lncRNA downstream 115573 227820 ~ 239273 (-) True XLOC_010359
TCONS_00021773 lncRNA downstream 148587 204125 ~ 206259 (-) True XLOC_010358
TCONS_00022067 lncRNA downstream 176983 176394 ~ 177863 (-) False XLOC_010357
TCONS_00020406 lncRNA upstream 14410 379809 ~ 383268 (-) True XLOC_010365
TCONS_00021775 lncRNA upstream 186283 551682 ~ 552627 (-) True XLOC_010366
TCONS_00020410 lncRNA upstream 195313 560712 ~ 562186 (-) True XLOC_010367
TCONS_00021776 lncRNA upstream 838743 1204142 ~ 1218565 (-) False XLOC_010368
TCONS_00021777 lncRNA upstream 839579 1204978 ~ 1218570 (-) True XLOC_010368
TCONS_00020404 mRNA downstream 74011 277789 ~ 280835 (-) True XLOC_010361
TCONS_00020403 mRNA downstream 74591 277789 ~ 280255 (-) False XLOC_010361
TCONS_00020402 mRNA downstream 91188 248239 ~ 263658 (-) True XLOC_010360
TCONS_00020405 mRNA upstream 13367 378766 ~ 383664 (-) False XLOC_010365
TCONS_00020407 mRNA upstream 190347 555746 ~ 563732 (-) False XLOC_010367
TCONS_00020408 mRNA upstream 193289 558688 ~ 563235 (-) False XLOC_010367
TCONS_00020409 mRNA upstream 194270 559669 ~ 560574 (-) False XLOC_010367
TCONS_00020411 mRNA upstream 1100225 1465624 ~ 1502699 (-) False XLOC_010370
TCONS_00020422 other upstream 2272960 2638359 ~ 2641494 (-) False XLOC_010377
TCONS_00020424 other upstream 2370277 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020433 other upstream 3845078 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020438 other upstream 4162082 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020445 other upstream 4250262 4615661 ~ 4619765 (-) False XLOC_010398

Expression Profile

//