RNA id: TU554795



Basic Information


Item Value
RNA id TU554795
length 357
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G483505
representative True

Chromosome Information


Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 4599037 ~ 4599393 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TACGGGACGTAACAAATGTAAACGTACCAACAGGAATTTCCCCTTCAACCTCTTCTTCTCGTATATTTTTGAAGAAAAAAAGCGTTGATGGCGCCTCTTCCTCCGTGACTATGTTTAAAAAGCTTATGATTTTCTGCTCTTCCTCTCCATCACCGCGACTGAGTAACTCCTCAAAACAGCCTGAATCAGGCAAATCAAACAGCTCACACACTGCGTTTTTAATCCACTCCACTCGAGGGTCATCGTGAGTCATTCTTGTTGTTGTTTAGGTAAGAATAACTATATAATAAAGTTTGTAATGTTCATGAGAAAACTATTCAGACTGTCATTGTCGCAACCGAAAACACGCTATGGTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU554763 lncRNA downstream 6545 4587213 ~ 4592492 (-) True G483483
TU554782 lncRNA downstream 14836 4580259 ~ 4584201 (-) True G483494
TU554749 lncRNA downstream 23021 4575785 ~ 4576016 (-) True G483474
TU554735 lncRNA downstream 25836 4544840 ~ 4573201 (-) True G483460
TU554734 lncRNA downstream 47131 4544840 ~ 4551906 (-) False G483460
TU554800 lncRNA upstream 15930 4615323 ~ 4615810 (-) True G483510
TU554802 lncRNA upstream 17692 4617085 ~ 4617306 (-) True G483511
TU554804 lncRNA upstream 23213 4622606 ~ 4622811 (-) True G483513
TU554805 lncRNA upstream 24451 4623844 ~ 4624442 (-) True G483514
TU554807 lncRNA upstream 28453 4627846 ~ 4628933 (-) True G483515
CI01000339_04500444_04509959.mRNA mRNA downstream 88255 4500257 ~ 4510782 (-) True CI01000339_04500444_04509959
CI01000339_04456736_04479850.mRNA mRNA downstream 119187 4456157 ~ 4479850 (-) True CI01000339_04456736_04479850
CI01000339_04449553_04451937.mRNA mRNA downstream 147100 4448977 ~ 4451937 (-) True CI01000339_04449553_04451937
CI01000339_04441515_04447089.mRNA mRNA downstream 151948 4441366 ~ 4447089 (-) True CI01000339_04441515_04447089
CI01000339_04428882_04435809.mRNA mRNA downstream 163228 4428788 ~ 4435809 (-) True CI01000339_04428882_04435809
CI01000339_04704467_04717848.mRNA mRNA upstream 104697 4704090 ~ 4718867 (-) True CI01000339_04704467_04717848
CI01000339_04723905_04731220.mRNA mRNA upstream 124117 4723510 ~ 4731220 (-) True CI01000339_04723905_04731220
CI01000339_04734544_04737942.mRNA mRNA upstream 134751 4734144 ~ 4738241 (-) True CI01000339_04734544_04737942
CI01000339_04739732_04740796.mRNA mRNA upstream 140182 4739575 ~ 4740984 (-) True CI01000339_04739732_04740796
CI01000339_04742986_04767624.mRNA mRNA upstream 143435 4742828 ~ 4770294 (-) True CI01000339_04742986_04767624
TU554535 other downstream 428535 4125258 ~ 4170502 (-) True G483285
TU554443 other downstream 820486 3777891 ~ 3778551 (-) True G483199
TU554347 other downstream 1186046 3401214 ~ 3401228 (-) True G483104
TU554345 other downstream 1201677 3394108 ~ 3397360 (-) False G483104
TU554799 other upstream 13459 4612852 ~ 4613318 (-) True G483509
TU554803 other upstream 18719 4618112 ~ 4618725 (-) True G483512
TU554760 other upstream 252364 4851757 ~ 4853447 (-) True G483481
TU555826 other upstream 657174 5274086 ~ 5274270 (-) True G484394
TU556180 other upstream 1424339 6023732 ~ 6024822 (-) True G484702

Expression Profile