RNA id: TU554800


Basic Information

Item Value
RNA id TU554800
length 393
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G483510
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 4615323 ~ 4615810 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTCCCTGAGAGCCTTATTTTTTAGGTCCAAAAGGAGAGGGAGTGACTCTTTGAATTCTTTCATGCGGCCCTCTAGGAAAAAAGCTACAGGAAGAGCTCTCACATCCTTCGGCAGCTTCCGCAAGCTCTTGATAAGTCCTTCAATGCCGTCCTGCAGGAGCTTTATGTCCAGATTTACCCAAAGAGTCTGCGACCACTCTGTCTTAGCTGCTTTCTGGCTCCTATAAATCTCATAGATCTGTCTCAGGCCCTTCATCTCCTTCTGTACATTGAGAAGCTCTGGGTACATAGTGATGGGCAGGCTGAACAATTTCTCAGCTTTAGCCAGGTCCTGACGGCTTGCCTCTACCCTAGCCAACTCCTTCTCGTAGGTATCCATGATCTCCAAACCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554795 lncRNA downstream 15930 4599037 ~ 4599393 (-) True G483505
TU554763 lncRNA downstream 22831 4587213 ~ 4592492 (-) True G483483
TU554782 lncRNA downstream 31122 4580259 ~ 4584201 (-) True G483494
TU554749 lncRNA downstream 39307 4575785 ~ 4576016 (-) True G483474
TU554735 lncRNA downstream 42122 4544840 ~ 4573201 (-) True G483460
TU554802 lncRNA upstream 1275 4617085 ~ 4617306 (-) True G483511
TU554804 lncRNA upstream 6796 4622606 ~ 4622811 (-) True G483513
TU554805 lncRNA upstream 8034 4623844 ~ 4624442 (-) True G483514
TU554807 lncRNA upstream 12036 4627846 ~ 4628933 (-) True G483515
TU554808 lncRNA upstream 13655 4629465 ~ 4629675 (-) True G483516
CI01000339_04500444_04509959.mRNA mRNA downstream 104541 4500257 ~ 4510782 (-) True CI01000339_04500444_04509959
CI01000339_04456736_04479850.mRNA mRNA downstream 135473 4456157 ~ 4479850 (-) True CI01000339_04456736_04479850
CI01000339_04449553_04451937.mRNA mRNA downstream 163386 4448977 ~ 4451937 (-) True CI01000339_04449553_04451937
CI01000339_04441515_04447089.mRNA mRNA downstream 168234 4441366 ~ 4447089 (-) True CI01000339_04441515_04447089
CI01000339_04428882_04435809.mRNA mRNA downstream 179514 4428788 ~ 4435809 (-) True CI01000339_04428882_04435809
CI01000339_04704467_04717848.mRNA mRNA upstream 88280 4704090 ~ 4718867 (-) True CI01000339_04704467_04717848
CI01000339_04723905_04731220.mRNA mRNA upstream 107700 4723510 ~ 4731220 (-) True CI01000339_04723905_04731220
CI01000339_04734544_04737942.mRNA mRNA upstream 118334 4734144 ~ 4738241 (-) True CI01000339_04734544_04737942
CI01000339_04739732_04740796.mRNA mRNA upstream 123765 4739575 ~ 4740984 (-) True CI01000339_04739732_04740796
CI01000339_04742986_04767624.mRNA mRNA upstream 127018 4742828 ~ 4770294 (-) True CI01000339_04742986_04767624
TU554799 other downstream 2005 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 444821 4125258 ~ 4170502 (-) True G483285
TU554443 other downstream 836772 3777891 ~ 3778551 (-) True G483199
TU554347 other downstream 1202332 3401214 ~ 3401228 (-) True G483104
TU554345 other downstream 1217963 3394108 ~ 3397360 (-) False G483104
TU554803 other upstream 2302 4618112 ~ 4618725 (-) True G483512
TU554760 other upstream 235947 4851757 ~ 4853447 (-) True G483481
TU555826 other upstream 640757 5274086 ~ 5274270 (-) True G484394
TU556180 other upstream 1407922 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 1638521 6254331 ~ 6256112 (-) True G484645

Expression Profile