RNA id: TU554802



Basic Information


Item Value
RNA id TU554802
length 222
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G483511
representative True

Chromosome Information


Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 4617085 ~ 4617306 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTGCTCCTGCACACAAGTAGGCTCACTGCTCCCCAGAATACTGAGCAGCTCATCGTCAGAAATAAAGAAAAAGCGTGGAAAAGCATTTCGTTTGGAATCGAGGTAATCGTTCAGACTCTTTTGACACCTCTCTAAACCATCGCTTAGGTTCTGCAGGTCAGCCAGACGATTTGGAACCAGACAGCATCTCTTAATTCCAGGGTCCTTCACTGTGTCAGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU554800 lncRNA downstream 1275 4615323 ~ 4615810 (-) True G483510
TU554795 lncRNA downstream 17692 4599037 ~ 4599393 (-) True G483505
TU554763 lncRNA downstream 24593 4587213 ~ 4592492 (-) True G483483
TU554782 lncRNA downstream 32884 4580259 ~ 4584201 (-) True G483494
TU554749 lncRNA downstream 41069 4575785 ~ 4576016 (-) True G483474
TU554804 lncRNA upstream 5300 4622606 ~ 4622811 (-) True G483513
TU554805 lncRNA upstream 6538 4623844 ~ 4624442 (-) True G483514
TU554807 lncRNA upstream 10540 4627846 ~ 4628933 (-) True G483515
TU554808 lncRNA upstream 12159 4629465 ~ 4629675 (-) True G483516
TU554809 lncRNA upstream 12493 4629799 ~ 4630016 (-) True G483517
CI01000339_04500444_04509959.mRNA mRNA downstream 106303 4500257 ~ 4510782 (-) True CI01000339_04500444_04509959
CI01000339_04456736_04479850.mRNA mRNA downstream 137235 4456157 ~ 4479850 (-) True CI01000339_04456736_04479850
CI01000339_04449553_04451937.mRNA mRNA downstream 165148 4448977 ~ 4451937 (-) True CI01000339_04449553_04451937
CI01000339_04441515_04447089.mRNA mRNA downstream 169996 4441366 ~ 4447089 (-) True CI01000339_04441515_04447089
CI01000339_04428882_04435809.mRNA mRNA downstream 181276 4428788 ~ 4435809 (-) True CI01000339_04428882_04435809
CI01000339_04704467_04717848.mRNA mRNA upstream 86784 4704090 ~ 4718867 (-) True CI01000339_04704467_04717848
CI01000339_04723905_04731220.mRNA mRNA upstream 106204 4723510 ~ 4731220 (-) True CI01000339_04723905_04731220
CI01000339_04734544_04737942.mRNA mRNA upstream 116838 4734144 ~ 4738241 (-) True CI01000339_04734544_04737942
CI01000339_04739732_04740796.mRNA mRNA upstream 122269 4739575 ~ 4740984 (-) True CI01000339_04739732_04740796
CI01000339_04742986_04767624.mRNA mRNA upstream 125522 4742828 ~ 4770294 (-) True CI01000339_04742986_04767624
TU554799 other downstream 3767 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 446583 4125258 ~ 4170502 (-) True G483285
TU554443 other downstream 838534 3777891 ~ 3778551 (-) True G483199
TU554347 other downstream 1204094 3401214 ~ 3401228 (-) True G483104
TU554346 other downstream 1220389 3394108 ~ 3394296 (-) True G483104
TU554803 other upstream 806 4618112 ~ 4618725 (-) True G483512
TU554760 other upstream 234451 4851757 ~ 4853447 (-) True G483481
TU555826 other upstream 639261 5274086 ~ 5274270 (-) True G484394
TU556180 other upstream 1406426 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 1637025 6254331 ~ 6256112 (-) True G484645

Expression Profile