RNA id: TU554810


Basic Information

Item Value
RNA id TU554810
length 273
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G483518
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 4630352 ~ 4630624 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTAATTGATAACCATGGCCTTCCCAAATATAGCAGGAGAAAACTTGGGGTTTGCAAGTTTGGTATTGAGGTAAAGCTTGAAGTTGGGATCATAGTCAACTTCCTTATCACCAAGTACGACAACCTGGCGTCCCTCTGCCCCTTTTACATTCTTCTCAAGGACATTGTCAATAACTGGATCAATATATTCATCCACATCTTGGAACAGGAAGGGGAAACCATACTTAATGGCCAACTCCAGCCCCTTCAAGAAGTCTGGGTCATTGAATGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554809 lncRNA downstream 336 4629799 ~ 4630016 (-) True G483517
TU554808 lncRNA downstream 677 4629465 ~ 4629675 (-) True G483516
TU554807 lncRNA downstream 1419 4627846 ~ 4628933 (-) True G483515
TU554805 lncRNA downstream 5910 4623844 ~ 4624442 (-) True G483514
TU554804 lncRNA downstream 7541 4622606 ~ 4622811 (-) True G483513
TU554811 lncRNA upstream 249 4630873 ~ 4631081 (-) True G483519
TU554812 lncRNA upstream 1000 4631624 ~ 4631901 (-) True G483520
TU554814 lncRNA upstream 3313 4633937 ~ 4634610 (-) True G483522
TU554815 lncRNA upstream 6524 4637148 ~ 4637463 (-) True G483523
TU554816 lncRNA upstream 7002 4637626 ~ 4637827 (-) True G483524
CI01000339_04500444_04509959.mRNA mRNA downstream 119570 4500257 ~ 4510782 (-) True CI01000339_04500444_04509959
CI01000339_04456736_04479850.mRNA mRNA downstream 150502 4456157 ~ 4479850 (-) True CI01000339_04456736_04479850
CI01000339_04449553_04451937.mRNA mRNA downstream 178415 4448977 ~ 4451937 (-) True CI01000339_04449553_04451937
CI01000339_04441515_04447089.mRNA mRNA downstream 183263 4441366 ~ 4447089 (-) True CI01000339_04441515_04447089
CI01000339_04428882_04435809.mRNA mRNA downstream 194543 4428788 ~ 4435809 (-) True CI01000339_04428882_04435809
CI01000339_04704467_04717848.mRNA mRNA upstream 73466 4704090 ~ 4718867 (-) True CI01000339_04704467_04717848
CI01000339_04723905_04731220.mRNA mRNA upstream 92886 4723510 ~ 4731220 (-) True CI01000339_04723905_04731220
CI01000339_04734544_04737942.mRNA mRNA upstream 103520 4734144 ~ 4738241 (-) True CI01000339_04734544_04737942
CI01000339_04739732_04740796.mRNA mRNA upstream 108951 4739575 ~ 4740984 (-) True CI01000339_04739732_04740796
CI01000339_04742986_04767624.mRNA mRNA upstream 112204 4742828 ~ 4770294 (-) True CI01000339_04742986_04767624
TU554803 other downstream 11627 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 17034 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 459850 4125258 ~ 4170502 (-) True G483285
TU554443 other downstream 851801 3777891 ~ 3778551 (-) True G483199
TU554347 other downstream 1217361 3401214 ~ 3401228 (-) True G483104
TU554760 other upstream 221133 4851757 ~ 4853447 (-) True G483481
TU555826 other upstream 625943 5274086 ~ 5274270 (-) True G484394
TU556180 other upstream 1393108 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 1623707 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 2370269 7000893 ~ 7004773 (-) True G484826

Expression Profile