RNA id: TU554760


Basic Information

Item Value
RNA id TU554760
length 762
RNA type TUCP
GC content 0.56
exon number 2
gene id G483481
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 4851757 ~ 4853447 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAGATAAGGTCTTCCTCTGGAAAGAGCTCTTCACAGAACTCGCAAGGCAGCATGATGTTTGAAGAGGGGCTGTGGCCTGGGGCCGTATTGGTTTTAGGGGGTGCAGCAGTGCAGTTGTTGTTTGTGTTGGAGGAGAGCTGGGAAGTGAGATTGCTATGGGCTGGTGCTCTTCCCAAGTGACGGTCCCACACATCAGTCCACACGCCCTCCTGACGGGGGTCCTCCAAGTCACCTTCACTCTGCAAGCTGAGGGCCAGCATGTAGTCCAGACTGGAGGACTCGTAGTCTGGCAGTTGTCCCAGAGACCATAGCAGGCTGTTGTTGTTCCCCTGCTCTGTTTCCTGATCCAGCAAAGCAAATTCACTGTTCCTTGTTTCTGTGTTTCTCCTGGTCCCTCCCCTCACTGTTCCTCTTGGGCTGTTATGCAGTCTGTCCTCCAAAGGTCGTGGTGGCCCCCTGCGGTCTGCAGCCCCCGTGTTGTTATTATTGTGGCTCCTCTCCTGGGCCCTCAACAGGTTATGGATGGAGTGTGCCTCAAACCATGCTCCAGGAGACTGGGACACTGCCCTACTGCTGTGCCTCTCCTGAGGTGGAGTCAGGCTTCCGCACAGGGCTGGATGGATGTGTTGCTCTCTCAGCATAACGTTACACTTGCAGACAGGGCAGGGCTCGGTGCGGGTGCCACAGTACTCTTCATGCTCTTTAGCCTGATAGGAGGCCAACTCCAGATCACAGAACTGACACGGGACCAGTCGATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554781 lncRNA downstream 17693 4827554 ~ 4834064 (-) True G483493
TU554870 lncRNA downstream 63868 4787689 ~ 4787889 (-) True G483576
TU554861 lncRNA downstream 146068 4705469 ~ 4705689 (-) True G483567
TU554853 lncRNA downstream 158326 4692202 ~ 4693431 (-) True G483560
TU554838 lncRNA downstream 173087 4669689 ~ 4678670 (-) True G483545
TU554907 lncRNA upstream 25259 4878706 ~ 4879251 (-) True G483609
TU554908 lncRNA upstream 25893 4879340 ~ 4879555 (-) True G483610
TU554758 lncRNA upstream 27081 4880528 ~ 4881743 (-) True G483480
TU554912 lncRNA upstream 51390 4904837 ~ 4910813 (-) True G483614
TU555837 lncRNA upstream 323706 5177153 ~ 5177568 (-) True G484405
CI01000339_04841245_04848286.mRNA mRNA downstream 3471 4840259 ~ 4848286 (-) True CI01000339_04841245_04848286
CI01000339_04773830_04777717.mRNA mRNA downstream 73735 4772981 ~ 4778022 (-) True CI01000339_04773830_04777717
CI01000339_04742986_04767624.mRNA mRNA downstream 81463 4742828 ~ 4770294 (-) True CI01000339_04742986_04767624
CI01000339_04739732_04740796.mRNA mRNA downstream 110773 4739575 ~ 4740984 (-) True CI01000339_04739732_04740796
CI01000339_04734544_04737942.mRNA mRNA downstream 113516 4734144 ~ 4738241 (-) True CI01000339_04734544_04737942
CI01000339_04889425_04898489.mRNA mRNA upstream 35753 4889200 ~ 4898489 (-) True CI01000339_04889425_04898489
CI01000339_04915744_04930094.mRNA mRNA upstream 62297 4915744 ~ 4930094 (-) True CI01000339_04915744_04930094
CI01000339_04955181_04994715.mRNA mRNA upstream 101418 4954865 ~ 4994835 (-) True CI01000339_04955181_04994715
CI01000339_05009812_05012651.mRNA mRNA upstream 156321 5009768 ~ 5014163 (-) True CI01000339_05009812_05012651
CI01000339_05022538_05028211.mRNA mRNA upstream 169091 5022538 ~ 5028211 (-) True CI01000339_05022538_05028211
TU554803 other downstream 233032 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 238439 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 681255 4125258 ~ 4170502 (-) True G483285
TU554443 other downstream 1073206 3777891 ~ 3778551 (-) True G483199
TU554347 other downstream 1438766 3401214 ~ 3401228 (-) True G483104
TU555826 other upstream 403120 5274086 ~ 5274270 (-) True G484394
TU556180 other upstream 1170285 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 1400884 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 2147446 7000893 ~ 7004773 (-) True G484826

Expression Profile