RNA id: TCONS_00021775


Basic Information

Item Value
RNA id TCONS_00021775
length 831
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_010366
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 551682 ~ 552627 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

actgaacaaactggtagcAGTGGGAAAGCCTcgcatatgtacctctggctacattcttcacgatctccagaaatgtatactgggCTACATTTTCGGATTGAGCTTCTGTTgaatttattgcagtgcttcttgtctgccGTGAAACACACTTTATATGGTATATcagtcaggcagtgaagatcagtgACTATTTTAAATGATCTTAAACATGGAGATATTGAGATGGCATGACCGTACACTCAAGCAGAGGATGCAGgaacgccattccttttcacgatgccagctgaccgcttacctctgtatgcaCGGCTTAACCTctgctaccagtttgtccagtagctcaccacatacatcagcagacttgagacacagggAGGAGTCAACCTCAAGTCCGGgcaagagcagttccagaaagcaggtaagacaaaaaccatGAAtggaataaatgtaaataacagggtgagaatgtggtgaaatctaaaaaaaacatggtatagagcagacgagggcttttctttttctagattgcttctgaaaacactattggttgggtttagggaaggaggatggttggtcagtcagttaaCAGTGGCCTCTAGTAGATTTGTGTGAGAACAGGAGGCGCGAATGCCACTCGTGACAGAAacttaagatctgaaaaagtatacaaagcgacctctagtggattcacaaaactgcaaagaaacatatctcctgggaagtatttggtgctctccagaaatgtatacaggggaacataatcagaatgagcctgggttgaatattgTGAGGTGCCGTGTGATAGAGGTTGTGTCAAGAAAGATTATTTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020406 lncRNA downstream 168414 379809 ~ 383268 (-) True XLOC_010365
TCONS_00022072 lncRNA downstream 184538 354846 ~ 367144 (-) False XLOC_010364
TCONS_00022071 lncRNA downstream 184767 354846 ~ 366915 (-) False XLOC_010364
TCONS_00022073 lncRNA downstream 184767 363724 ~ 366915 (-) True XLOC_010364
TCONS_00022070 lncRNA downstream 186283 354846 ~ 365399 (-) False XLOC_010364
TCONS_00020410 lncRNA upstream 8085 560712 ~ 562186 (-) True XLOC_010367
TCONS_00021776 lncRNA upstream 651515 1204142 ~ 1218565 (-) False XLOC_010368
TCONS_00021777 lncRNA upstream 652351 1204978 ~ 1218570 (-) True XLOC_010368
TCONS_00022074 lncRNA upstream 798344 1350971 ~ 1353006 (-) True XLOC_010369
TCONS_00021778 lncRNA upstream 1395398 1948025 ~ 1949069 (-) True XLOC_010372
TCONS_00020405 mRNA downstream 168018 378766 ~ 383664 (-) False XLOC_010365
TCONS_00020404 mRNA downstream 270847 277789 ~ 280835 (-) True XLOC_010361
TCONS_00020403 mRNA downstream 271427 277789 ~ 280255 (-) False XLOC_010361
TCONS_00020402 mRNA downstream 288024 248239 ~ 263658 (-) True XLOC_010360
TCONS_00020407 mRNA upstream 3119 555746 ~ 563732 (-) False XLOC_010367
TCONS_00020408 mRNA upstream 6061 558688 ~ 563235 (-) False XLOC_010367
TCONS_00020409 mRNA upstream 7042 559669 ~ 560574 (-) False XLOC_010367
TCONS_00020411 mRNA upstream 912997 1465624 ~ 1502699 (-) False XLOC_010370
TCONS_00020412 mRNA upstream 917791 1470418 ~ 1503023 (-) True XLOC_010370
TCONS_00020422 other upstream 2085732 2638359 ~ 2641494 (-) False XLOC_010377
TCONS_00020424 other upstream 2183049 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020433 other upstream 3657850 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020438 other upstream 3974854 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020445 other upstream 4063034 4615661 ~ 4619765 (-) False XLOC_010398

Expression Profile

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