RNA id: TU555874


Basic Information

Item Value
RNA id TU555874
length 555
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G484436
representative False

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5360916 ~ 5361470 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAAATTCAAAAGCAATTTATTAAGTAGCCTATCAGATGTACAAATGACAGGAGAAAACTAAAAGCACAATGGACAGATCTAGAATTTTTGGAGGGATACTCCAAATTCTCAGATGTAAGACTAACTTTCTTCAGTGGAACACAAACAGAAATTTTAATGCGAGTGGATGAGCCCTTCAAAGTTGATGGCTCAAATACCATGAAAAACAAACAAATCGGTAATCCATACCACACTAGAGGATAAATCAATGTCTTCTGAAGTGAGATGATAGTTGTGTGAGAGAAAAATTCTACTATTTTAAACCTTTTACAATATAAATCACTTTCGGTCAACGGTCATGATTTCATGCTTGATATAAATGACAGCATGTTGTGAAGTGTGACATAAATGCATTGTGAAACTCAAGAAGAAGTGACATCCTCAGTGCTTCTGCATGACTTCTTGCGCGAGTTTTACAACGCGCTGACGTTATGCCAAGCATAACCTTATGAACCCATATTTGACAGTTAGCCAGAAGCGATGGTTTACAGTGTTTAAAATATTAGTATTTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555834 lncRNA downstream 69217 5194993 ~ 5195332 (-) True G484402
TU555831 lncRNA downstream 104599 5255971 ~ 5256317 (-) False CI01000339_05254264_05259467
TU555837 lncRNA downstream 183348 5177153 ~ 5177568 (-) True G484405
TU554912 lncRNA downstream 450103 4904837 ~ 4910813 (-) True G483614
TU554758 lncRNA downstream 479173 4880528 ~ 4881743 (-) True G483480
TU555901 lncRNA upstream 28299 5389769 ~ 5389979 (-) True G484452
TU555907 lncRNA upstream 43860 5405330 ~ 5405546 (-) True G484458
TU555908 lncRNA upstream 51002 5412472 ~ 5412768 (-) True G484459
TU555880 lncRNA upstream 53230 5414700 ~ 5415765 (-) True G484437
TU555909 lncRNA upstream 63434 5424904 ~ 5425858 (-) True G484460
CI01000339_05329216_05330546.mRNA mRNA downstream 30370 5329140 ~ 5330546 (-) True CI01000339_05329216_05330546
CI01000339_05286494_05309122.mRNA mRNA downstream 51574 5286050 ~ 5309342 (-) False CI01000339_05286494_05309122
CI01000339_05264265_05270065.mRNA mRNA downstream 90851 5264265 ~ 5270065 (-) False CI01000339_05264265_05270065
CI01000339_05254264_05259467.mRNA mRNA downstream 101262 5254264 ~ 5259654 (-) False CI01000339_05254264_05259467
CI01000339_05245266_05252163.mRNA mRNA downstream 108753 5244943 ~ 5252163 (-) True CI01000339_05245266_05252163
CI01000339_05381662_05386593.mRNA mRNA upstream 19820 5381290 ~ 5386593 (-) True CI01000339_05381662_05386593
CI01000339_05387768_05396589.mRNA mRNA upstream 26225 5387695 ~ 5396589 (-) True CI01000339_05387768_05396589
CI01000339_05522752_05535461.mRNA mRNA upstream 161263 5522733 ~ 5535665 (-) False CI01000339_05522752_05535461
CI01000339_05584421_05594083.mRNA mRNA upstream 222669 5584139 ~ 5594083 (-) True CI01000339_05584421_05594083
CI01000339_05595943_05596416.mRNA mRNA upstream 233859 5595329 ~ 5596416 (-) True CI01000339_05595943_05596416
TU555826 other downstream 86646 5274086 ~ 5274270 (-) True G484394
TU554760 other downstream 507469 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 742191 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 747598 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 1190414 4125258 ~ 4170502 (-) True G483285
TU556180 other upstream 662262 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 892861 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 1639423 7000893 ~ 7004773 (-) True G484826

Expression Profile