RNA id: TU555907


Basic Information

Item Value
RNA id TU555907
length 217
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G484458
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5405330 ~ 5405546 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGCTATGTTGCTAAATGTGTTTCCACAGAAAAATAGACCGTATAACCTGGCTTTTCTTGAGACGCCTCAAAATTAGGAAACACCCTTTTTTGTTCCGCAGAGACCTCATACTCCTTTAATTTTAGGATCAAATATTCTTAACCCTAACCCTAACTGGCCTAAGAGTCGGACTAAGGTCGCGGGTTCGAGTCTCAGTATATAGGTGGGGGAGTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555901 lncRNA downstream 15351 5389769 ~ 5389979 (-) True G484452
TU555874 lncRNA downstream 43860 5360916 ~ 5361470 (-) False G484436
TU555876 lncRNA downstream 43900 5360916 ~ 5361430 (-) True G484436
TU555872 lncRNA downstream 44134 5360916 ~ 5361196 (-) False G484436
TU555834 lncRNA downstream 113631 5194993 ~ 5195332 (-) True G484402
TU555908 lncRNA upstream 6926 5412472 ~ 5412768 (-) True G484459
TU555880 lncRNA upstream 9154 5414700 ~ 5415765 (-) True G484437
TU555909 lncRNA upstream 19358 5424904 ~ 5425858 (-) True G484460
TU555917 lncRNA upstream 77861 5483407 ~ 5486905 (-) True G484467
TU555976 lncRNA upstream 119750 5525296 ~ 5525386 (-) False G484520
CI01000339_05387768_05396589.mRNA mRNA downstream 8741 5387695 ~ 5396589 (-) True CI01000339_05387768_05396589
CI01000339_05381662_05386593.mRNA mRNA downstream 18737 5381290 ~ 5386593 (-) True CI01000339_05381662_05386593
CI01000339_05329216_05330546.mRNA mRNA downstream 74784 5329140 ~ 5330546 (-) True CI01000339_05329216_05330546
CI01000339_05286494_05309122.mRNA mRNA downstream 95988 5286050 ~ 5309342 (-) False CI01000339_05286494_05309122
CI01000339_05264265_05270065.mRNA mRNA downstream 135265 5264265 ~ 5270065 (-) False CI01000339_05264265_05270065
CI01000339_05522752_05535461.mRNA mRNA upstream 117187 5522733 ~ 5535665 (-) False CI01000339_05522752_05535461
CI01000339_05584421_05594083.mRNA mRNA upstream 178593 5584139 ~ 5594083 (-) True CI01000339_05584421_05594083
CI01000339_05595943_05596416.mRNA mRNA upstream 189783 5595329 ~ 5596416 (-) True CI01000339_05595943_05596416
CI01000339_05624136_05625750.mRNA mRNA upstream 218174 5623720 ~ 5625750 (-) True CI01000339_05624136_05625750
CI01000339_05627087_05634310.mRNA mRNA upstream 221541 5627087 ~ 5634365 (-) True CI01000339_05627087_05634310
TU555826 other downstream 131060 5274086 ~ 5274270 (-) True G484394
TU554760 other downstream 551883 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 786605 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 792012 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 1234828 4125258 ~ 4170502 (-) True G483285
TU556180 other upstream 618186 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 848785 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 1595347 7000893 ~ 7004773 (-) True G484826

Expression Profile