RNA id: TU555995


Basic Information

Item Value
RNA id TU555995
length 293
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G484536
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5565368 ~ 5565660 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGACACAATCCCTCATTAATTTCTGAACCGTAAATAATAAATAAATCAAATTAGAAACAAGTTATTGATTGCATCTGAAGCAGTAAGTTTTATATCCAAGCACATTAATGAAAAAAAAAATCAGACAATGCACCAGCAATTTAGTAATATCCCAGCAGTTATGGTCTTGACTGGTCTTGAAACGTAATCCCTGAGTTCTCTGAAGATGGGTACTGTGATTTTGGCCACGATTTGGTCGTCTGAGACAAATTTTAAGAATCCTAAAAGATTCCTATAATCCTAGGCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555994 lncRNA downstream 470 5564503 ~ 5564898 (-) True G484535
TU555993 lncRNA downstream 1157 5563939 ~ 5564211 (-) True G484534
TU555992 lncRNA downstream 1601 5563064 ~ 5563767 (-) True G484533
TU555991 lncRNA downstream 3559 5560609 ~ 5561809 (-) True G484532
TU555988 lncRNA downstream 10452 5554248 ~ 5554916 (-) True G484530
TU555996 lncRNA upstream 426 5566086 ~ 5566409 (-) True G484537
TU556000 lncRNA upstream 8466 5574126 ~ 5574564 (-) True G484541
TU556003 lncRNA upstream 13246 5578906 ~ 5579162 (-) True G484544
TU556047 lncRNA upstream 183720 5749380 ~ 5749955 (-) True G484587
TU556157 lncRNA upstream 271166 5836826 ~ 5837063 (-) True G484683
CI01000339_05522752_05535461.mRNA mRNA downstream 29703 5522733 ~ 5535665 (-) False CI01000339_05522752_05535461
CI01000339_05387768_05396589.mRNA mRNA downstream 168779 5387695 ~ 5396589 (-) True CI01000339_05387768_05396589
CI01000339_05381662_05386593.mRNA mRNA downstream 178775 5381290 ~ 5386593 (-) True CI01000339_05381662_05386593
CI01000339_05329216_05330546.mRNA mRNA downstream 234822 5329140 ~ 5330546 (-) True CI01000339_05329216_05330546
CI01000339_05286494_05309122.mRNA mRNA downstream 256026 5286050 ~ 5309342 (-) False CI01000339_05286494_05309122
CI01000339_05584421_05594083.mRNA mRNA upstream 18479 5584139 ~ 5594083 (-) True CI01000339_05584421_05594083
CI01000339_05595943_05596416.mRNA mRNA upstream 29669 5595329 ~ 5596416 (-) True CI01000339_05595943_05596416
CI01000339_05624136_05625750.mRNA mRNA upstream 58060 5623720 ~ 5625750 (-) True CI01000339_05624136_05625750
CI01000339_05627087_05634310.mRNA mRNA upstream 61427 5627087 ~ 5634365 (-) True CI01000339_05627087_05634310
CI01000339_05639652_05652636.mRNA mRNA upstream 72299 5637959 ~ 5652830 (-) True CI01000339_05639652_05652636
TU555826 other downstream 291098 5274086 ~ 5274270 (-) True G484394
TU554760 other downstream 711921 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 946643 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 952050 4612852 ~ 4613318 (-) True G483509
TU554535 other downstream 1394866 4125258 ~ 4170502 (-) True G483285
TU556180 other upstream 458072 6023732 ~ 6024822 (-) True G484702
TU556119 other upstream 688671 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 1435233 7000893 ~ 7004773 (-) True G484826

Expression Profile