RNA id: TCONS_00021777


Basic Information

Item Value
RNA id TCONS_00021777
length 385
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id XLOC_010368
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 1204142 ~ 1218570 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATAAAACGCAGCGGATGCTGCTCCATGTAAACAAACTGCACTCTCAAATAGGCGGAGTTAAATACAACAGTGAACGGAACAAAACGAGGGAATATAAACAAACTTCTGCCTCCAACAGCCTGATGTGACGTCTTCATTTATACaggCAGCTCCTGTCGTTTCCTCCTCCTCAGACAGCTCCATGTCTTCAATATCTATGTTGTCCTTCTGCTGCTGAGCTCCATCTCCGGTCTGGCTCTGAAAAGGTGACTCGGATCCACTTGGTGATGGGGCGTCTGCAGAAGGAGACGGGAGCGGGGAGTCCTCCAGACGGGGCAGCGTCGCCTTCAAAGCATCCAGTTTACGCTTCAGGCTGCAGACGCGGTTGGCGAACGCTTTATACGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020410 lncRNA downstream 642792 560712 ~ 562186 (-) True XLOC_010367
TCONS_00021775 lncRNA downstream 652351 551682 ~ 552627 (-) True XLOC_010366
TCONS_00020406 lncRNA downstream 821710 379809 ~ 383268 (-) True XLOC_010365
TCONS_00022072 lncRNA downstream 837834 354846 ~ 367144 (-) False XLOC_010364
TCONS_00022074 lncRNA upstream 132401 1350971 ~ 1353006 (-) True XLOC_010369
TCONS_00021778 lncRNA upstream 729455 1948025 ~ 1949069 (-) True XLOC_010372
TCONS_00020423 lncRNA upstream 1428943 2647513 ~ 2650375 (-) True XLOC_010377
TCONS_00022075 lncRNA upstream 1591147 2809717 ~ 2812008 (-) True XLOC_010380
TCONS_00021779 lncRNA upstream 2129436 3348006 ~ 3348709 (-) True XLOC_010384
TCONS_00020407 mRNA downstream 641246 555746 ~ 563732 (-) False XLOC_010367
TCONS_00020408 mRNA downstream 641743 558688 ~ 563235 (-) False XLOC_010367
TCONS_00020409 mRNA downstream 644404 559669 ~ 560574 (-) False XLOC_010367
TCONS_00020405 mRNA downstream 821314 378766 ~ 383664 (-) False XLOC_010365
TCONS_00020404 mRNA downstream 924143 277789 ~ 280835 (-) True XLOC_010361
TCONS_00020411 mRNA upstream 247054 1465624 ~ 1502699 (-) False XLOC_010370
TCONS_00020412 mRNA upstream 251848 1470418 ~ 1503023 (-) True XLOC_010370
TCONS_00020413 mRNA upstream 285710 1504280 ~ 1757521 (-) False XLOC_010371
TCONS_00020414 mRNA upstream 399824 1618394 ~ 1709328 (-) True XLOC_010371
TCONS_00020415 mRNA upstream 1132950 2351520 ~ 2390931 (-) True XLOC_010373
TCONS_00020422 other upstream 1419789 2638359 ~ 2641494 (-) False XLOC_010377
TCONS_00020424 other upstream 1517106 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020433 other upstream 2991907 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020438 other upstream 3308911 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020445 other upstream 3397091 4615661 ~ 4619765 (-) False XLOC_010398

Expression Profile

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