Item | Value |
---|---|
RNA id | TU556104 |
length | 511 |
lncRNA type | antisense_over |
GC content | 0.50 |
exon number | 3 |
gene id | G484632 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000339 |
NCBI id | null |
chromosome length | 8057057 |
location | 6041807 ~ 6044025 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU556185 | lncRNA | downstream | 14549 | 6025003 ~ 6027258 (-) | True | G484707 |
TU556179 | lncRNA | downstream | 16985 | 6021828 ~ 6024822 (-) | False | G484702 |
TU556133 | lncRNA | downstream | 180604 | 5858808 ~ 5861203 (-) | True | G484659 |
TU556158 | lncRNA | downstream | 204018 | 5837573 ~ 5837789 (-) | True | G484684 |
TU556157 | lncRNA | downstream | 204744 | 5836826 ~ 5837063 (-) | True | G484683 |
TU556188 | lncRNA | upstream | 23467 | 6067492 ~ 6067961 (-) | True | G484710 |
TU556134 | lncRNA | upstream | 212604 | 6256629 ~ 6257120 (-) | True | G484660 |
TU556127 | lncRNA | upstream | 217438 | 6261463 ~ 6261714 (-) | True | G484653 |
TU556120 | lncRNA | upstream | 218884 | 6262909 ~ 6263179 (-) | True | G484646 |
TU556142 | lncRNA | upstream | 224685 | 6268710 ~ 6289236 (-) | True | G484668 |
CI01000339_05987848_05990050.mRNA | mRNA | downstream | 51729 | 5987718 ~ 5990078 (-) | True | CI01000339_05987848_05990050 |
CI01000339_05984460_05985628.mRNA | mRNA | downstream | 56151 | 5984331 ~ 5985656 (-) | True | CI01000339_05984460_05985628 |
CI01000339_05935601_05965650.mRNA | mRNA | downstream | 76157 | 5935360 ~ 5965650 (-) | True | CI01000339_05935601_05965650 |
CI01000339_05932828_05933256.mRNA | mRNA | downstream | 108551 | 5932698 ~ 5933256 (-) | True | CI01000339_05932828_05933256 |
CI01000339_05917956_05923087.mRNA | mRNA | downstream | 117795 | 5917900 ~ 5924012 (-) | True | CI01000339_05917956_05923087 |
CI01000339_06044422_06045535.mRNA | mRNA | upstream | 324 | 6044349 ~ 6046046 (-) | True | CI01000339_06044422_06045535 |
CI01000339_06049238_06060176.mRNA | mRNA | upstream | 5213 | 6049238 ~ 6060359 (-) | True | CI01000339_06049238_06060176 |
CI01000339_06102824_06169802.mRNA | mRNA | upstream | 58799 | 6102824 ~ 6169802 (-) | True | CI01000339_06102824_06169802 |
CI01000339_06193430_06204965.mRNA | mRNA | upstream | 149077 | 6193102 ~ 6205388 (-) | True | CI01000339_06193430_06204965 |
CI01000339_06235679_06237223.mRNA | mRNA | upstream | 191416 | 6235441 ~ 6237612 (-) | True | CI01000339_06235679_06237223 |
TU556180 | other | downstream | 16985 | 6023732 ~ 6024822 (-) | True | G484702 |
TU555826 | other | downstream | 767537 | 5274086 ~ 5274270 (-) | True | G484394 |
TU554760 | other | downstream | 1188360 | 4851757 ~ 4853447 (-) | True | G483481 |
TU554803 | other | downstream | 1423082 | 4618112 ~ 4618725 (-) | True | G483512 |
TU554799 | other | downstream | 1428489 | 4612852 ~ 4613318 (-) | True | G483509 |
TU556119 | other | upstream | 210306 | 6254331 ~ 6256112 (-) | True | G484645 |
TU556319 | other | upstream | 956868 | 7000893 ~ 7004773 (-) | True | G484826 |