RNA id: TU556104



Basic Information


Item Value
RNA id TU556104
length 511
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G484632
representative True

Chromosome Information


Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 6041807 ~ 6044025 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TAATAATATTCATTTATTTAGTTCCTGGATTCCAAGAATTCTGATAAAGAAGGGAACAGACAAAAGCAACGAGAAAAGGCAAACAGGACAGTCCACATTTATACATCATAGCCAATAATGCCTCCCTTCCCAATGATCTCCCCGATGTAGAACCACATCAGAACTTCTGTGGTAACAAGTCCATTCCTCAGAGCATCCCTGACTGTGGTCTGACCGAGCCGTCCTGACTGGAAGCTCTTGAGGAGATCTTGGAAGCCGCTGATGGCCTTGGGGATCTCGGCAGGGGTGGGAGGCACCAGCTCCACACGGGCGTAATACCAGAATGTGGCTAGCCGGGGCTTGGAGTAGTTCACAGCAGCCCGACCAACGTTGGCACTTTAGCCACCAATTTCTGTACCGCCTGGGCCATGATTTCTGTGAACTGTGAAGATTTATTCGCCGCTTCTCTCCACAAACCGGGGCCCTTCAATGAATGTCACCTCCAGCGAAGGACCCTTCAATCGAGCAGGCA

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU556185 lncRNA downstream 14549 6025003 ~ 6027258 (-) True G484707
TU556179 lncRNA downstream 16985 6021828 ~ 6024822 (-) False G484702
TU556133 lncRNA downstream 180604 5858808 ~ 5861203 (-) True G484659
TU556158 lncRNA downstream 204018 5837573 ~ 5837789 (-) True G484684
TU556157 lncRNA downstream 204744 5836826 ~ 5837063 (-) True G484683
TU556188 lncRNA upstream 23467 6067492 ~ 6067961 (-) True G484710
TU556134 lncRNA upstream 212604 6256629 ~ 6257120 (-) True G484660
TU556127 lncRNA upstream 217438 6261463 ~ 6261714 (-) True G484653
TU556120 lncRNA upstream 218884 6262909 ~ 6263179 (-) True G484646
TU556142 lncRNA upstream 224685 6268710 ~ 6289236 (-) True G484668
CI01000339_05987848_05990050.mRNA mRNA downstream 51729 5987718 ~ 5990078 (-) True CI01000339_05987848_05990050
CI01000339_05984460_05985628.mRNA mRNA downstream 56151 5984331 ~ 5985656 (-) True CI01000339_05984460_05985628
CI01000339_05935601_05965650.mRNA mRNA downstream 76157 5935360 ~ 5965650 (-) True CI01000339_05935601_05965650
CI01000339_05932828_05933256.mRNA mRNA downstream 108551 5932698 ~ 5933256 (-) True CI01000339_05932828_05933256
CI01000339_05917956_05923087.mRNA mRNA downstream 117795 5917900 ~ 5924012 (-) True CI01000339_05917956_05923087
CI01000339_06044422_06045535.mRNA mRNA upstream 324 6044349 ~ 6046046 (-) True CI01000339_06044422_06045535
CI01000339_06049238_06060176.mRNA mRNA upstream 5213 6049238 ~ 6060359 (-) True CI01000339_06049238_06060176
CI01000339_06102824_06169802.mRNA mRNA upstream 58799 6102824 ~ 6169802 (-) True CI01000339_06102824_06169802
CI01000339_06193430_06204965.mRNA mRNA upstream 149077 6193102 ~ 6205388 (-) True CI01000339_06193430_06204965
CI01000339_06235679_06237223.mRNA mRNA upstream 191416 6235441 ~ 6237612 (-) True CI01000339_06235679_06237223
TU556180 other downstream 16985 6023732 ~ 6024822 (-) True G484702
TU555826 other downstream 767537 5274086 ~ 5274270 (-) True G484394
TU554760 other downstream 1188360 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 1423082 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 1428489 4612852 ~ 4613318 (-) True G483509
TU556119 other upstream 210306 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 956868 7000893 ~ 7004773 (-) True G484826

Expression Profile