RNA id: TU556188


Basic Information

Item Value
RNA id TU556188
length 470
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G484710
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 6067492 ~ 6067961 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTGCTTGTGCACCTTTGCCTACCCAATTTCTTCCTTCCAGTCAACTTTGCATTTAATATGCTTTGATATACACTCTGTAAACAGCCACCCCATTCAGTAATGACCTTCTGTGACTTACTCTCTTTGTGGAGGGTGTCAATGATTGTCTCCTGGACCATTGCCAAGTCAGCAGTCTTCCCCATTAGTGTGGTTTCAAAGAACAAAAGATACCCGGAATTTATACTGTAGGGATGGTCATTTAATGAAACTCAAATGTAAATATTCTAATATTTTGAGATACTGGATTTTGGACTTTCATGAGCTGTACGCTCTAATCAACAAATTAAAAAAAAAAAAACTTTTGAAATGTTTTACTTTACATGTAGGGAATCTAGAATATATGAAAGTTTCATTTTTTAAAATAATTTACAATAAAAAAATGAACTTTTTCACGATATTCTAATTATATGACCAGCACCTGTATATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU556104 lncRNA downstream 23467 6041807 ~ 6044025 (-) True G484632
TU556102 lncRNA downstream 24832 6041807 ~ 6042660 (-) False G484632
TU556185 lncRNA downstream 40234 6025003 ~ 6027258 (-) True G484707
TU556179 lncRNA downstream 42670 6021828 ~ 6024822 (-) False G484702
TU556133 lncRNA downstream 206289 5858808 ~ 5861203 (-) True G484659
TU556134 lncRNA upstream 188668 6256629 ~ 6257120 (-) True G484660
TU556127 lncRNA upstream 193502 6261463 ~ 6261714 (-) True G484653
TU556120 lncRNA upstream 194948 6262909 ~ 6263179 (-) True G484646
TU556142 lncRNA upstream 200749 6268710 ~ 6289236 (-) True G484668
TU556220 lncRNA upstream 222924 6290885 ~ 6291193 (-) True G484742
CI01000339_06049238_06060176.mRNA mRNA downstream 7133 6049238 ~ 6060359 (-) True CI01000339_06049238_06060176
CI01000339_06044422_06045535.mRNA mRNA downstream 21446 6044349 ~ 6046046 (-) True CI01000339_06044422_06045535
CI01000339_05987848_05990050.mRNA mRNA downstream 77414 5987718 ~ 5990078 (-) True CI01000339_05987848_05990050
CI01000339_05984460_05985628.mRNA mRNA downstream 81836 5984331 ~ 5985656 (-) True CI01000339_05984460_05985628
CI01000339_05935601_05965650.mRNA mRNA downstream 101842 5935360 ~ 5965650 (-) True CI01000339_05935601_05965650
CI01000339_06102824_06169802.mRNA mRNA upstream 34863 6102824 ~ 6169802 (-) True CI01000339_06102824_06169802
CI01000339_06193430_06204965.mRNA mRNA upstream 125141 6193102 ~ 6205388 (-) True CI01000339_06193430_06204965
CI01000339_06235679_06237223.mRNA mRNA upstream 167480 6235441 ~ 6237612 (-) True CI01000339_06235679_06237223
CI01000339_06486384_06493464.mRNA mRNA upstream 418423 6486384 ~ 6493872 (-) True CI01000339_06486384_06493464
CI01000339_06598910_06604125.mRNA mRNA upstream 530225 6598186 ~ 6605212 (-) True CI01000339_06598910_06604125
TU556180 other downstream 42670 6023732 ~ 6024822 (-) True G484702
TU555826 other downstream 793222 5274086 ~ 5274270 (-) True G484394
TU554760 other downstream 1214045 4851757 ~ 4853447 (-) True G483481
TU554803 other downstream 1448767 4618112 ~ 4618725 (-) True G483512
TU554799 other downstream 1454174 4612852 ~ 4613318 (-) True G483509
TU556119 other upstream 186370 6254331 ~ 6256112 (-) True G484645
TU556319 other upstream 932932 7000893 ~ 7004773 (-) True G484826

Expression Profile