RNA id: TCONS_00021778



Basic Information


Item Value
RNA id TCONS_00021778
length 416
lncRNA type intronic
GC content 0.39
exon number 2
gene id XLOC_010372
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 1948025 ~ 1949069 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CCGAAACCCNCCTTTGCGAGATTCGCTGCATCTATACCTGATTTGCGTTCAAAATGCCTGCTTCATTATTTCATAGTAGGAGCAAACATGCCTTAAGAAAATAAGTAGGTTTGAAACTTTAGTAACCATAAAAAGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCCTACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATagctgaatcgATGACATCCTGAAAGCAGCAATACAATTAAGGTACGTTTTCAttgcttcattttttaaaaccacttaTAGTTGTACAGTTTGATGTTAGTTTAAATATAACTATGTTAGTGATCAGTATTCATACCTAGGATAACAATTCTTGTTTTACGAAAGGTAACTTGGCTTGCTTGCCCTAATGTCATGTTTGCT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00022074 lncRNA downstream 595019 1350971 ~ 1353006 (-) True XLOC_010369
TCONS_00021777 lncRNA downstream 729455 1204978 ~ 1218570 (-) True XLOC_010368
TCONS_00021776 lncRNA downstream 729460 1204142 ~ 1218565 (-) False XLOC_010368
TCONS_00020410 lncRNA downstream 1385839 560712 ~ 562186 (-) True XLOC_010367
TCONS_00021775 lncRNA downstream 1395398 551682 ~ 552627 (-) True XLOC_010366
TCONS_00020423 lncRNA upstream 698444 2647513 ~ 2650375 (-) True XLOC_010377
TCONS_00022075 lncRNA upstream 860648 2809717 ~ 2812008 (-) True XLOC_010380
TCONS_00021779 lncRNA upstream 1398937 3348006 ~ 3348709 (-) True XLOC_010384
TCONS_00022076 lncRNA upstream 1835805 3784874 ~ 3796633 (-) True XLOC_010386
TCONS_00022078 lncRNA upstream 2229967 4179036 ~ 4179914 (-) False XLOC_010388
TCONS_00020413 mRNA downstream 190504 1504280 ~ 1757521 (-) False XLOC_010371
TCONS_00020414 mRNA downstream 238697 1618394 ~ 1709328 (-) True XLOC_010371
TCONS_00020412 mRNA downstream 445002 1470418 ~ 1503023 (-) True XLOC_010370
TCONS_00020411 mRNA downstream 445326 1465624 ~ 1502699 (-) False XLOC_010370
TCONS_00020407 mRNA downstream 1384293 555746 ~ 563732 (-) False XLOC_010367
TCONS_00020415 mRNA upstream 402451 2351520 ~ 2390931 (-) True XLOC_010373
TCONS_00020416 mRNA upstream 445124 2394193 ~ 2414063 (-) True XLOC_010374
TCONS_00020417 mRNA upstream 533429 2482498 ~ 2504005 (-) True XLOC_010375
TCONS_00020418 mRNA upstream 566154 2515223 ~ 2558653 (-) True XLOC_010376
TCONS_00020419 mRNA upstream 688409 2637478 ~ 2650354 (-) False XLOC_010377
TCONS_00020422 other upstream 689290 2638359 ~ 2641494 (-) False XLOC_010377
TCONS_00020424 other upstream 786607 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020433 other upstream 2261408 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020438 other upstream 2578412 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020445 other upstream 2666592 4615661 ~ 4619765 (-) False XLOC_010398

Expression Profile


Expression of TCONS_00021778 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.
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Expression of TCONS_00021778 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.