RNA id: TU556539


Basic Information

Item Value
RNA id TU556539
length 362
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G485000
representative True

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 7123825 ~ 7124186 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGGGCGGAGGTGTCGGGTGTATGCTAAGCTAGTATCTGCTTTGTGGCCGGCATCAAAAATTAATAAATAAGTAAACGAAGCAGATGACTGTAGTTTTAATCACTGATGAAGCTGACACAGTCACACTATGCTTAATATTATTGAGATTTTAGCTTACCCAGTTTAGTTTTATTTTAGACGGAGCTGCTTTTTTATAAAGCTTTATGCCTACTACACTGCGCACACAGCTTTCATCTACTTCTTTTTAAAGGGACAGTTCACCAAAAAATGAAAATTCTTTCATCATTTACTCATGTTGATTTAAATCTGTATGACTATACTTCTGCGGAACACAAAAGAAGATATTTTGAAGAATGTACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU556511 lncRNA downstream 34440 7089021 ~ 7089385 (-) True G484991
TU556316 lncRNA downstream 119052 7000893 ~ 7004773 (-) False G484826
TU556318 lncRNA downstream 119052 7000893 ~ 7004773 (-) False G484826
TU556364 lncRNA downstream 124850 6997811 ~ 6998975 (-) True G484871
TU556453 lncRNA downstream 306762 6815204 ~ 6817063 (-) True G484943
TU556347 lncRNA upstream 58033 7182219 ~ 7312927 (-) True G484854
TU556343 lncRNA upstream 129143 7253329 ~ 7256986 (-) True G484850
TU556558 lncRNA upstream 143783 7267969 ~ 7270942 (-) True G485011
TU556314 lncRNA upstream 164110 7289908 ~ 7289959 (-) True G484824
TU556588 lncRNA upstream 205112 7329298 ~ 7330158 (-) True G485034
CI01000339_07082365_07085238.mRNA mRNA downstream 38456 7081556 ~ 7085369 (-) True CI01000339_07082365_07085238
CI01000339_07062220_07073959.mRNA mRNA downstream 49866 7060881 ~ 7073959 (-) True CI01000339_07062220_07073959
CI01000339_07035942_07039033.mRNA mRNA downstream 84792 7035942 ~ 7039033 (-) True CI01000339_07035942_07039033
CI01000339_07023718_07029434.mRNA mRNA downstream 94391 7022252 ~ 7029434 (-) True CI01000339_07023718_07029434
CI01000339_07009961_07010749.mRNA mRNA downstream 112223 7009894 ~ 7011602 (-) True CI01000339_07009961_07010749
CI01000339_07241105_07251176.mRNA mRNA upstream 116908 7241094 ~ 7251176 (-) True CI01000339_07241105_07251176
CI01000339_07277428_07288530.mRNA mRNA upstream 153082 7277268 ~ 7288530 (-) False CI01000339_07277428_07288530
CI01000339_07293147_07293732.mRNA mRNA upstream 168401 7292587 ~ 7294846 (-) True CI01000339_07293147_07293732
CI01000339_07323037_07323778.mRNA mRNA upstream 198478 7322664 ~ 7324233 (-) True CI01000339_07323037_07323778
CI01000339_07331830_07342029.mRNA mRNA upstream 207367 7331553 ~ 7342208 (-) False CI01000339_07331830_07342029
TU556319 other downstream 119052 7000893 ~ 7004773 (-) True G484826
TU556119 other downstream 867713 6254331 ~ 6256112 (-) True G484645
TU556180 other downstream 1099003 6023732 ~ 6024822 (-) True G484702
TU555826 other downstream 1849555 5274086 ~ 5274270 (-) True G484394
TU554760 other downstream 2270378 4851757 ~ 4853447 (-) True G483481

Expression Profile