RNA id: CI01000340_00023459_00027830.mRNA


Basic Information

Item Value
RNA id CI01000340_00023459_00027830.mRNA
length 863
RNA type mRNA
GC content 0.46
exon number 3
gene id CI01000340_00023459_00027830
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 22938 ~ 27830 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACGACCACCACCACTTATCAAGGCATGGATCCGACTGCGAGGAGCAGCTCCAGAGTGCTGCGTCCACCAGGTGGAGGTTCAAACATCTGCTTTGGCACAGAGGAAGAGAAACCTGTGAAAAAAAACAAAATGGCATCTAGCATATTTGCTGAACCCGAGGACCCTCACGCCCATCGGAGGAACAATCCGCCAGATAGCGCAGAAGAACTTAAACCTGTTCAGGAGCAGCATGACACACCAGCTCCTCCTTGCCTCTCTGCAACAGAGCAGCCTGCAGCTGGGCTTCCTTCTGGCCGTAGAAACCCACCGGGGGGCAAATCCTCTCTCATCTTAGGCTAAAGCATTGCCGCACTTAAGGATAAGATCTGGGCCTATGTGAAACAAGCATCTCAGAGTAAATGTGCTGTTCTGTAGTCAGTGCTCATCCTCTGCATAACTGTATTCATAAAATGACATAAAGCCACAAAGAACTGATTCAGATCGGGGCAATTTTGTCAGAGCGTGCCACAAATCTGAGCTGTGATTTGTTCAAAGAATGTCTTTGAATATGTTGAGTGTTGGTCTCTCAGTCTTGTGTCAACTAAAGACCCTTTAGGAAAAACAAATCCTATGTATGCACTGCTACTCTCAGATTCTACAAACCACAGGCCACAATTTGCCATCAAAGTTCTTAACATTCAACATTTAGAAGGTTAAACTGCATTCACGTAAGCCTAAGAAATGTGTCCCTGATTGAGTGTTTGTCTCCCTTTTCATGTATTAAGTTTTTGTCAGCACTTTATGAACTGTGGTGCCCAATTTGCGGTGCCTCAGACCTGCTGGTTAAGACACAAAGTTTCACATCCATCACTGCGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU556955 lncRNA downstream 2706 19983 ~ 20232 (-) True G485360
TU557409 lncRNA upstream 19722 47552 ~ 48064 (-) True G485753
TU557399 lncRNA upstream 30053 57883 ~ 60043 (-) False G485744
TU557400 lncRNA upstream 30053 57883 ~ 58639 (-) True G485744
TU557401 lncRNA upstream 32355 60185 ~ 118368 (-) True G485745
TU557434 lncRNA upstream 79055 106885 ~ 113896 (-) True G485771
CI01000340_00031137_00033754.mRNA mRNA upstream 2950 30780 ~ 33754 (-) True CI01000340_00031137_00033754
CI01000340_00035016_00043632.mRNA mRNA upstream 7186 35016 ~ 44034 (-) True CI01000340_00035016_00043632
CI01000340_00062787_00080635.mRNA mRNA upstream 34950 62780 ~ 80972 (-) False CI01000340_00062787_00080635
CI01000340_00095106_00097863.mRNA mRNA upstream 67216 95046 ~ 97863 (-) True CI01000340_00095106_00097863
CI01000340_00100271_00103531.mRNA mRNA upstream 72218 100048 ~ 103531 (-) True CI01000340_00100271_00103531
TU557403 other upstream 51585 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU557449 other upstream 297504 325334 ~ 325716 (-) False G485786
TU557450 other upstream 297504 325334 ~ 325663 (-) True G485786
TU557495 other upstream 758721 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU559770 other upstream 1867971 1895801 ~ 1902272 (-) True G487884

Expression Profile