RNA id: CI01000340_00035016_00043632.mRNA


Basic Information

Item Value
RNA id CI01000340_00035016_00043632.mRNA
length 2317
RNA type mRNA
GC content 0.44
exon number 14
gene id CI01000340_00035016_00043632
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 35016 ~ 44034 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGTTATTAGACAATTATACAGCCAAAGCAGTTTATTTAGCCTACTGAAAAATATAGGCATAGGCCTGCCATGTACAAAGGGTGTTTCTTGCGGTTGTTTTTTAGTAAAACTAACAGTTTACAAACTGTTTTCTTTTGTTAAAGCCGTCTTGTCTTTCAATCTTTACCTATGAATATATGAATTATTTAGGCCTACGATAATTTATCATATATTGTATCTATGATAACCTAAAAAAAAAGCTAAATATATAGCTGATAATAATATTTTATTATTAATTATTTAGGAACTCCGCTTCCTCTCGGAACCACAACAGATTCACAGACTCAGAGTCAGAGGCACAAGAATGTCACATGACGGGTATGTGTAGTAGCTCGCTCTCGTCAGCTATGCAATTGTGATCATGGCGGATCCGGAAGGAGAGTCACTGGAGTCATGGCTAAACAAAGCCACCAATCCTTCCAACAGACAGGAGGAGTGGGAGTACATCATTGGATTCTGTGACCAAATCAATAAGGAACTTGAAGGCCCACAGATATCGGTCAGATTATTAGCACATAAAATTCAGTCACCCCAAGAATGGGAGTCATTACAAACACTTACTTATTTGGGAGACAGAGTGTCTGAACGAGTGAAGACCAAAGTAATAGAGTTGCTCTACAGCTGGTCAGTTGCTTTACCAGATGAGGCAAAGATCACAGAGGCCTATCAGATGCTAAAGAAGCAAGGTTCTTTCATCACAAATATAAATACTTACATCTATAAGAATCTACTTACTTTCTGTGTTCCAATTTTGCTAGATTGTTTTGTTCAATCTTCAATGCATTCTTTCTTAGGTATTGTAACAGAAGACCCAGAGGTTCCTGTGGACAAGACCCTTGTTCCCTCGCCAAAGCCCAAGAATCCAGTGTTTGACAATGAGGAAAAGAGTAAGCGTCTTGCAGAACTTCTTAAGAGTAAAAAGCCTGAGGATCTTCAAGAAGCCAACCGCATTATCAAGAACATGGTCAAAGAGGATGAGGCTATACAGCAGAAAGCTTCCCATCGTGCCAACACCCTAGAGGAGGTGAACAACAGTGTGAAGCTCCTTAATGAGATGCTAAGACATTTCAAAAAAGATGAGTCGACACAAGCAGACAAAGAACTTCTAACGGATCTTTATAATGACTGTGACAAACTTCGAACTGCTGTCTTCAGACTCGCCACCGAGACAGAGGATGATGACAGTGCCTTAGGTGATATTTTGCACGCTAGTGATGATCTCTCACGGGTAATCAACTCCTATAAAAAGATTGTTGAAGGACAGACCATTGTGATTGACATGCCAGGGTTAACGGCCTCAAAATACACCAATGATGGAAGCTCATCTGAGATTTTGATTGATTTGGCTGATTTGGACTCTGGGTCCCCTTCACCCCTCAAACATGTTTTGACTCCACCTCAGCACTCCGATTCCATTCCTGCTGACCTCCTCACACTTACATCTATAATTGGAGCTCAGCCTTCCTCTTCCAACACGTCTTCTGGATCGTCAAGTTTCCAAATCAGTCCTCCATCAAGCCAGCTTCCCAGCAGTCTTTCTCTTCTGGATGAAGAACTTGGTTCATTAGCGCCACCTACCTCTGAAGCTACCTCAGTTACAGGCTTTGAAAACTCCCTTCAGCAGAGCAGTAAAGATTTTGCCATGTTGGACCTGGACAAGGCTAATAGCAGCCAGTCCAAATATTCAAGCTCGGGCAGCAGAGAACTTAGAGCTTGGGAAGAGAACATTCATCCTGCATTACCCACATTCAGTTTTCCCGCTGGAATAACACCAGTGCCTTCTGCTGTAACCTCTGCCAAACCTCAGAGCTTCGCCCCAGACAGCCCTCTCTTCAGATCCCTCTCTCCAACATTACCCACCAGTCAGTCACCCTCAGGCTCGGACATCTCCCTAAACAGTGTCTTTGTCCCACTGGAGGCCATTAAACCAAGTAAGGAGTGTCCAGTTACAGCCTACGATAAGGATGGTGTTCGTGTGTTGTTGCACTTTGCTACTGACCATCCACCTGGTCGTCCTGATGTTCTGGTGATTGTCGTGTCCATGTTAAATACAGCACCACTGTTAGTGAGGAATGTAGTGCTTCAGGCAGCTGTGCCAAAGTCTATGAGAGTGAAGCTGCAGCCCCCTTCTGGAACAGAAATGGTCCCCTTTAACCCCTTCATGCCCCCCAGTTCTATCACACAGATCATGCTGCTGGCTAACCCACTGAAGGAGAAAGTGAGAATGAGGTACAAGTTGACATTCATCCTTGGAGATCGACAGGTCACAGAGTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU556955 lncRNA downstream 14784 19983 ~ 20232 (-) True G485360
TU557409 lncRNA upstream 3518 47552 ~ 48064 (-) True G485753
TU557399 lncRNA upstream 13849 57883 ~ 60043 (-) False G485744
TU557400 lncRNA upstream 13849 57883 ~ 58639 (-) True G485744
TU557401 lncRNA upstream 16151 60185 ~ 118368 (-) True G485745
TU557434 lncRNA upstream 62851 106885 ~ 113896 (-) True G485771
CI01000340_00031137_00033754.mRNA mRNA downstream 1262 30780 ~ 33754 (-) True CI01000340_00031137_00033754
CI01000340_00023459_00027830.mRNA mRNA downstream 7186 22938 ~ 27830 (-) True CI01000340_00023459_00027830
CI01000340_00062787_00080635.mRNA mRNA upstream 18746 62780 ~ 80972 (-) False CI01000340_00062787_00080635
CI01000340_00095106_00097863.mRNA mRNA upstream 51012 95046 ~ 97863 (-) True CI01000340_00095106_00097863
CI01000340_00100271_00103531.mRNA mRNA upstream 56014 100048 ~ 103531 (-) True CI01000340_00100271_00103531
CI01000340_00145063_00147754.mRNA mRNA upstream 100492 144526 ~ 149098 (-) True CI01000340_00145063_00147754
CI01000340_00151447_00155343.mRNA mRNA upstream 106501 150535 ~ 155343 (-) True CI01000340_00151447_00155343
TU557403 other upstream 35381 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU557449 other upstream 281300 325334 ~ 325716 (-) False G485786
TU557450 other upstream 281300 325334 ~ 325663 (-) True G485786
TU557495 other upstream 742517 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU559770 other upstream 1851767 1895801 ~ 1902272 (-) True G487884

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063801 True 2264 mRNA 0.45 17 NC_007117.7 19315715 ~ 19333947 (-)
mexican tetra (Astyanax mexicanus) TU370528 True 1245 lncRNA 0.44 11 NW_019172091.1 238440 ~ 241786 (+)