RNA id: CI01000340_00062787_00080635.mRNA


Basic Information

Item Value
RNA id CI01000340_00062787_00080635.mRNA
length 1166
RNA type mRNA
GC content 0.46
exon number 6
gene id CI01000340_00062787_00080635
representative False

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 62780 ~ 82095 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACCGGGCCGATGTTAGTTGAAAGCTAAAACTGTAGTGTTAATGTGCCGGTCAAAGTTGTTTTTTTTTTTGTTTTTTTCTGTCAGTTCACAGATTAACTAACGTTAACATTTAAATTTAACGTCAGGTCACAGTTTATAACGTTAGCCAGTGTGTTTCTGTATGTTCACAGTTTAGCTATAACGTTTGCTTTTCGTTGTTTTTTTTTTTCCCAGTCTGTTCATATCAGCATGTGTGAATGTATGTACACGCTTGTGGCTAATGTTAGCATATGTCTCTTTGGTGTATTATTATGGTAACAGTTCAAAAATTTGCTTCTTAAGGTCCATAAGCCAGATGGTGGAACGCTGTCCTGCTCTTTTTACAGAAGATCAGGTGTTCATGGAGTTCAACAGGATTGTGGGAAAGAACCTAAAGCAGGAATTCTATGATAGCATTAATCGACACAGTCTTCATCTAATTGATATCTTTCGATCTAAGAGAGGGAATGTTGGACAGCTGTTCACACCGCTTTCACAACAAACCAGGATTCAAGAGCCAACTGATAATACGTCACTGCTCGGAGGGCTCCCAGTTGTCCTTGGTGACAACCCCACGAACTTCTTCAAAGCATGCTTTGCCTGGATTTCGCCCCAACACTCACTGAAATTTCAGAAGTTAGCGACGGCATTCAGATCGGGGACCAACCTCCCCTTAAAAATGTTCAGAAGCCTCCTCAGCAGTTCCCTGATTGAAGGCCCATGTCCCACCTCGACCGTGACACGAGGGCCGTATTATTCTCAGTGTGATCCATGGCTGCACCAGAGCCCTGGTCTCCTGGAAATCACACCATCTAAATTAGGTGGGAGTGGAACTGGGCTCAGTTTCCAGAAGGCCGCCTCTATCTGTGGGCACAGGACATTCTCCGCTCATAGCACTGCTCCCTCAGGCCATCAGCTGAATCAAGGAGGACAGATGCTCAGTCTTACTCGTGGCACCACTCTGGCAGAACCAGCCGTGGTTCCCAGGAGTAGTTCAGCTGCTGTCAGCAGCACCATGGCCAATCCCACTGAGGAGCTGTTGGACGGCAGGTGCACCCCATCCATGCTTAAAGTATACAGGGCAGCTGTCGTTTCGTACCGCACTCCTATAGCTGGCCGGTCAGCTGGGGAAACATGACATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557399 lncRNA downstream 2737 57883 ~ 60043 (-) False G485744
TU557400 lncRNA downstream 4141 57883 ~ 58639 (-) True G485744
TU557409 lncRNA downstream 14716 47552 ~ 48064 (-) True G485753
TU556955 lncRNA downstream 42548 19983 ~ 20232 (-) True G485360
TU557434 lncRNA upstream 25913 106885 ~ 113896 (-) True G485771
TU557438 lncRNA upstream 60239 141211 ~ 141449 (-) True G485775
TU557467 lncRNA upstream 270384 351356 ~ 351724 (-) True G485796
TU557534 lncRNA upstream 398453 479425 ~ 480779 (-) True G485852
TU557482 lncRNA upstream 415705 496677 ~ 499007 (-) True G485805
CI01000340_00035016_00043632.mRNA mRNA downstream 18746 35016 ~ 44034 (-) True CI01000340_00035016_00043632
CI01000340_00031137_00033754.mRNA mRNA downstream 29026 30780 ~ 33754 (-) True CI01000340_00031137_00033754
CI01000340_00023459_00027830.mRNA mRNA downstream 34950 22938 ~ 27830 (-) True CI01000340_00023459_00027830
CI01000340_00095106_00097863.mRNA mRNA upstream 14074 95046 ~ 97863 (-) True CI01000340_00095106_00097863
CI01000340_00100271_00103531.mRNA mRNA upstream 19076 100048 ~ 103531 (-) True CI01000340_00100271_00103531
CI01000340_00145063_00147754.mRNA mRNA upstream 63554 144526 ~ 149098 (-) True CI01000340_00145063_00147754
CI01000340_00151447_00155343.mRNA mRNA upstream 69563 150535 ~ 155343 (-) True CI01000340_00151447_00155343
CI01000340_00197972_00296049.mRNA mRNA upstream 117000 197972 ~ 296049 (-) True CI01000340_00197972_00296049
TU557449 other upstream 244362 325334 ~ 325716 (-) False G485786
TU557450 other upstream 244362 325334 ~ 325663 (-) True G485786
TU557495 other upstream 705579 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU559770 other upstream 1814829 1895801 ~ 1902272 (-) True G487884
TU560772 other upstream 3924833 4005805 ~ 4006448 (-) True G488782

Expression Profile