RNA id: CI01000340_00100271_00103531.mRNA


Basic Information

Item Value
RNA id CI01000340_00100271_00103531.mRNA
length 1007
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000340_00100271_00103531
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 100048 ~ 103531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACAAGACAGACAGAAGATAGAAGACTACAGCCCTCCACACCCGAGAGGAGGAGCCTCTTTAGTTATTCGCTCAGTGCCAAAAGATCCACTCCTGATGATAACAGTGTTTCCCCGTACTCCCTCTCCCCTGTTAACAGCAAAAGTCAGAAGCTGCTGCGGTCGCCAAGAAAGCCGACGCGCAAAATTTCCAAGATTCCATTTAAAGTGCTAGATGCACCAGAGCTACAAGATGACTTCTACCTCAACTTAGTGGACTGGTCCTCTTTAAATGTACTCAGCGTTGGACTGGGAACTTGTGTTTACCTTTGGAGTGCATGCACCAGTCAAGCTAGTCGGAGAGGGGTAATCTTGTCGCTGTGGGTACGCACAAAGGTTTTGTACAAATTTGGGATGCTACCGCTGGCAAAAAGCTATTTGCCTTGGACGGACACACAGCATGTGCGGCTTGTACCTGTGGAAGTGCCTGACAAAATCTGTGGTTGTTCACCAGAGTCATTGAGGGTCAGTCCAGGAAAGACTGTTGCTGTGGTCACAATCAATGCTGTTGGTTTCCTTATTTTTAATAGACTGGCAAGATCTCAGCAGATAGTTTTCAGAAAAGTTGAGTGGGAGAATGTGCGATTCGAGGTGGACAATATATGCAAGGAAGAGCCCTTCATCTGCCCTGCATGCACCCCAGATATGCTTGCAGTTTCCGTAGATGGAAACCGCAAGCATTACCGTTTCAAGAATGCTGCTAGGTACTCCAAACTGTGTGTCACAGTGTTTGTATTAATAAGATAACAAAGCTGAAATTTTAAATAAGTGACACTTTGAGCGCTGTTGAGGGGATTTGTAAACACCTCTGATTGGCCATTGTGTTGACGCGTGTGATGGAAATTTTTTTTCTTCTACAGGCCTAATAAGCTAACTTTGAAATAGAGAAATAGTCACTAGGACTGAGTGTTGTAACAAGTGGAAAAATTCTGCTGTGCTGGCTAGACAGCATCCTTCTAAGGATAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557399 lncRNA downstream 40005 57883 ~ 60043 (-) False G485744
TU557400 lncRNA downstream 41409 57883 ~ 58639 (-) True G485744
TU557409 lncRNA downstream 51984 47552 ~ 48064 (-) True G485753
TU556955 lncRNA downstream 79816 19983 ~ 20232 (-) True G485360
TU557434 lncRNA upstream 3354 106885 ~ 113896 (-) True G485771
TU557438 lncRNA upstream 37680 141211 ~ 141449 (-) True G485775
TU557467 lncRNA upstream 247825 351356 ~ 351724 (-) True G485796
TU557534 lncRNA upstream 375894 479425 ~ 480779 (-) True G485852
TU557482 lncRNA upstream 393146 496677 ~ 499007 (-) True G485805
CI01000340_00095106_00097863.mRNA mRNA downstream 2185 95046 ~ 97863 (-) True CI01000340_00095106_00097863
CI01000340_00062787_00080635.mRNA mRNA downstream 19076 62780 ~ 80972 (-) False CI01000340_00062787_00080635
CI01000340_00035016_00043632.mRNA mRNA downstream 56014 35016 ~ 44034 (-) True CI01000340_00035016_00043632
CI01000340_00031137_00033754.mRNA mRNA downstream 66294 30780 ~ 33754 (-) True CI01000340_00031137_00033754
CI01000340_00023459_00027830.mRNA mRNA downstream 72218 22938 ~ 27830 (-) True CI01000340_00023459_00027830
CI01000340_00145063_00147754.mRNA mRNA upstream 40995 144526 ~ 149098 (-) True CI01000340_00145063_00147754
CI01000340_00151447_00155343.mRNA mRNA upstream 47004 150535 ~ 155343 (-) True CI01000340_00151447_00155343
CI01000340_00197972_00296049.mRNA mRNA upstream 94441 197972 ~ 296049 (-) True CI01000340_00197972_00296049
CI01000340_00300171_00311362.mRNA mRNA upstream 196364 299895 ~ 312018 (-) True CI01000340_00300171_00311362
CI01000340_00320527_00323526.mRNA mRNA upstream 216612 320143 ~ 324010 (-) True CI01000340_00320527_00323526
TU557403 other downstream 17953 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU557449 other upstream 221803 325334 ~ 325716 (-) False G485786
TU557450 other upstream 221803 325334 ~ 325663 (-) True G485786
TU557495 other upstream 683020 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU559770 other upstream 1792270 1895801 ~ 1902272 (-) True G487884
TU560772 other upstream 3902274 4005805 ~ 4006448 (-) True G488782

Expression Profile