RNA id: CI01000340_00300171_00311362.mRNA


Basic Information

Item Value
RNA id CI01000340_00300171_00311362.mRNA
length 2747
RNA type mRNA
GC content 0.43
exon number 14
gene id CI01000340_00300171_00311362
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 299895 ~ 312018 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCTTTTGCCAGAAAACATCTAATCCTTCTCCGCCCTTAGACGAATAAGCTTTTCCACATCTTCGTCTGTCCCTGAGGTAATCATTGACACTTAGCTAATTGAGTGTTCAAGTGTATGTTGAAATCTGTCAAATAAACTGAATTAAACAATTTATCAATCAATTAAAAAGGAACTTACACCTGTATTGTTCTACCGTGGACTCCATCTTGTGTCGAGACGCGAGAATTCATCCGAGGCATTTCGGACATAAGAATCGGTTCTGCTCAGATTTTCAAGTCGAATCGCTCTCGCGGTACTTTGATGTCATACGTCGATCGGTCCGCACAGCGCCGCTTCAACTCGAACGCGCACCTAAAAGTTGTGCAAGGGCTCCCGGGAAGACTTATTTAAAATTACATTTAAATGACTCATCAGACAAAACAAAATCGCTTAAATTATTTAGACATCCCAGCAATAACTTAAAATAAAAAACTGTGATTTTTTGTGTCCTCTAAAAAACAGTTCAAATGAATCGAATCAGTGAAATGAACTCTCTTTACGCTACTAAGCAACGAGTCCAAACACAGCGTGTCACTGTTGCCTAGATACGTGTGTTTGGCTCCCGAAGCCAGCAGCCTTTTAAACACATATCCGAAGCTTAAAGTTCTATCACGATGGCAGAAGACACGCAAGAAGTCCCTCAACTCGCATTAGAGGCTGTTATTGGGTTTAATGGGCATGTGTTTTCTGGACTCAAAGTGCATCCAGACAGAGAACATATTATTTATCCTCTTGGCTGCACTGTTATTATTAAAAGTCTGAGAAGTGGAAAACAAGATTTCCTTCATGGCCACACGAACAACGTCTCTTGCATTTCTGTGTCTAAAAGTGGACGCTATATTGCATCTGGACAGGTCACTTTCATGGGCTTTAAGGCTGATGTTATTATCTGGGACTATGAGAAGAAGGAGATTTATGCTCGTCTTGCGCTCCATAAAGCTAAAGTTGAAGATCTTAGCTTCTCCCCAAATGATAAGTATCTGGTGTCTCTGGGTGGACAGGATGATGCCAGTATCGTTGTGTGGAACATTGAGAGTAAGGAGGCTATATGTGGCAGTCCTGCTTCAGCACAGAGTGCTGGTCACTGCCTCACCATAGAGTACACCAACCTGAATGATGAAATCTTTGTCTCTGCTGGAAAAAAGATTCGGCCCACAGAATGTCAGACTGGACAGCTCAAGAGAATTGTCAAATGCCTTGAGATCCCAAATGATGATAGTTATTTCTACTGTGGAACTACAAGTGGGGATATTCTGAAAGTGAACCTGAAGACTAGGTTGCTCAACAGCTGTGGACCTGTTAAACAAAAATTCAGCAAGGGAGTGAACACTCTTAAAGTCTTGAAGACCGGTGATATTTTAGTGGGATCAGGAGATGGGATGTTGACTTTGTGCTCAGGAGGGAATTTCAAAACCATTAAGAGTGTTCAGTTGGAGGGAGGGGTGACGTCTGTGGCCTTGCGTGGAGATGGACAACAGTTCTACGTCGGGACAGAGGCAGCACAGATCTACAGTTTAGGCTATGCTGACTTCAAACCAGAGCTCATTGCTACAAATCATAACAGTGCTGTAAAAGATGTGGCCTTTCCTTTTGGGACATCAGAGCTCTTTGCCACCTGTTCACAGAATGATATACGAGTGTGGCATTCTGAGTCCTCCAAGGAACTTCTGCGTATCATAGTGCCCAACATAAAATGCAACGCTCTGGGCTTTATGCAAGATGGCCGGAGCATCTTCAGTGCTTGGAACGATGGGAAGATTCGTGTGTTCACTCCAGAGAGTGGGAAGCTGAGGCTGATAATTCATAATGCCCACAGTATGGGAGTGACTGCCATAGCAGCAACCAATGACTGCAAGAGGATTGTCAGCGGAGGGGGAGAAGGACAGGTGAGAGTCTGGGAGATATTCCAGAAATCTCATCAACTCGTTGAGACCATGAAGGAGCACAAAGCCACAGTTAACTGTATTAAAATCAAGAGTAATGACAAGGAGTGTGTGACGGCCAGCTCTGATGGAGCCTGCATCATCTGGGACCTGGTGAGGTTTGTCAGGAATCAAATGGTCTTGGCCAATACCCTGTTCAGTGTTGTATGTTACAACCCTGAGGAATTCCAGATCATCACCAGTGGCACTGACAGAAAGATTGGCTACTGGGAGGTATATGATGGTTCAGCAATCAGAGAACTTGAGGGCTCCTTGTCTGGAGCTATAAATGGCATGCACATTTCTGAGGACGGAAAATATTTTGTGACTGGTGGAGATGACAAACTACTAAAGCTCTGGCACTATTCAGATGGTGAAGTGACCCACATTGGCATTGGGCACAGTGGAAGCATCACAAATGTGAGGATCTGTCCCAACAGCAGATATATTGTCAGTACCAGTGCCGATGGAGCTATCCTAAGGTGGAGATACCCACAGCCCTCATAGAACCCTTAAGAGTGAATATGATCATCTAATGCAGTTCAGACATGATGATTGTTAGAGAAATATACATTTGCCTTGCAAGTATCGTTTTCAAGAAATTATTTTTTGGTATAAATTTTCTAAAGATTTAAAACCCAACAGAATTGATATTAAATTTGCTGTGACTTTTTTTCTTAGGAGCAAATGCAGGCCCTTTGGATTTCAGTTACTAAATTTAAACATAGTATTACACATTAATTTGGCACCTTAATCTGCAAGAAAACATTATTGTATAATAAA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557438 lncRNA downstream 158446 141211 ~ 141449 (-) True G485775
TU557401 lncRNA downstream 181527 60185 ~ 118368 (-) True G485745
TU557434 lncRNA downstream 185999 106885 ~ 113896 (-) True G485771
TU557399 lncRNA downstream 239852 57883 ~ 60043 (-) False G485744
TU557467 lncRNA upstream 39338 351356 ~ 351724 (-) True G485796
TU557534 lncRNA upstream 167407 479425 ~ 480779 (-) True G485852
TU557482 lncRNA upstream 184659 496677 ~ 499007 (-) True G485805
TU557471 lncRNA upstream 262378 574396 ~ 676396 (-) False G485800
TU557472 lncRNA upstream 262378 574396 ~ 676396 (-) True G485800
CI01000340_00197972_00296049.mRNA mRNA downstream 3846 197972 ~ 296049 (-) True CI01000340_00197972_00296049
CI01000340_00151447_00155343.mRNA mRNA downstream 144552 150535 ~ 155343 (-) True CI01000340_00151447_00155343
CI01000340_00145063_00147754.mRNA mRNA downstream 150797 144526 ~ 149098 (-) True CI01000340_00145063_00147754
CI01000340_00100271_00103531.mRNA mRNA downstream 196364 100048 ~ 103531 (-) True CI01000340_00100271_00103531
CI01000340_00095106_00097863.mRNA mRNA downstream 202032 95046 ~ 97863 (-) True CI01000340_00095106_00097863
CI01000340_00320527_00323526.mRNA mRNA upstream 8125 320143 ~ 324010 (-) True CI01000340_00320527_00323526
CI01000340_00399009_00473643.mRNA mRNA upstream 86991 399009 ~ 473643 (-) True CI01000340_00399009_00473643
CI01000340_00641314_00671233.mRNA mRNA upstream 329275 641293 ~ 671233 (-) True CI01000340_00641314_00671233
CI01000340_00683967_00684845.mRNA mRNA upstream 370776 682794 ~ 684845 (-) False CI01000340_00683967_00684845
CI01000340_00739436_00741531.mRNA mRNA upstream 426387 738405 ~ 741637 (-) True CI01000340_00739436_00741531
TU557403 other downstream 217800 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU557449 other upstream 13316 325334 ~ 325716 (-) False G485786
TU557450 other upstream 13316 325334 ~ 325663 (-) True G485786
TU557495 other upstream 474533 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU559770 other upstream 1583783 1895801 ~ 1902272 (-) True G487884
TU560772 other upstream 3693787 4005805 ~ 4006448 (-) True G488782

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063811 False 2189 mRNA 0.43 14 NC_007117.7 19667619 ~ 19683406 (-)