RNA id: TCONS_00020422


Basic Information

Item Value
RNA id TCONS_00020422
length 503
RNA type processed_transcript
GC content 0.48
exon number 3
gene id XLOC_010377
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 2637478 ~ 2650375 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cctaatgttggagcacatctgatcatttctggaagctgattcatTCAGGGGGCGTtgttagtagctgaagGTGGTTTCTCCATGGGTGGAGCCATGGCGCTTCATCTGGTCTGCAGGCACCATCAGGACATTGCTGGCATCTTCTGTCTGTCCAGCTTCCTTAACAAAGACTCAGCGGTATATCAGGCAGTAGAAAATGCACAGCGCCCCCTACCTGAGCTCCTGCAGTGTCACGGCACATCAGACGAGCTGGTTTTCCATGACTGGGGCGAGAAGACGAACACGCTGCTGAAAAAAGCTGGACTCAATGCATCTTTCCATTCCTTCCCAGACCTCAACCATCAGTTGTGTCGACAAGAACTGGAGTTGCTTCGCTCCTGGATCCTGAATAAGCTTTCCATTTAAAGAGTCCTTAATTCTGGACAATGACCACGGCTTCCTCATCACTTACACACAGTAACCAGCATTAACATGTTGTCATGTAATATGAATGCATTGAATAT

Function

GO:

id name namespace
GO:0002084 protein depalmitoylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-32 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLAL1 (lysophospholipase like 1).

Ensembl:

ensembl_id ENSDART00000157109

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021778 lncRNA downstream 689290 1948025 ~ 1949069 (-) True XLOC_010372
TCONS_00022074 lncRNA downstream 1285353 1350971 ~ 1353006 (-) True XLOC_010369
TCONS_00021777 lncRNA downstream 1419789 1204978 ~ 1218570 (-) True XLOC_010368
TCONS_00021776 lncRNA downstream 1419794 1204142 ~ 1218565 (-) False XLOC_010368
TCONS_00020410 lncRNA downstream 2076173 560712 ~ 562186 (-) True XLOC_010367
TCONS_00020423 lncRNA upstream 6019 2647513 ~ 2650375 (-) True XLOC_010377
TCONS_00022075 lncRNA upstream 168223 2809717 ~ 2812008 (-) True XLOC_010380
TCONS_00021779 lncRNA upstream 706512 3348006 ~ 3348709 (-) True XLOC_010384
TCONS_00022076 lncRNA upstream 1143380 3784874 ~ 3796633 (-) True XLOC_010386
TCONS_00022078 lncRNA upstream 1537542 4179036 ~ 4179914 (-) False XLOC_010388
TCONS_00020418 mRNA downstream 79706 2515223 ~ 2558653 (-) True XLOC_010376
TCONS_00020417 mRNA downstream 134354 2482498 ~ 2504005 (-) True XLOC_010375
TCONS_00020416 mRNA downstream 224296 2394193 ~ 2414063 (-) True XLOC_010374
TCONS_00020415 mRNA downstream 247428 2351520 ~ 2390931 (-) True XLOC_010373
TCONS_00020413 mRNA downstream 880838 1504280 ~ 1757521 (-) False XLOC_010371
TCONS_00020425 mRNA upstream 103512 2745006 ~ 2807527 (-) True XLOC_010379
TCONS_00020426 mRNA upstream 172739 2814233 ~ 2818170 (-) True XLOC_010381
TCONS_00020427 mRNA upstream 206071 2847565 ~ 2870522 (-) True XLOC_010382
TCONS_00020428 mRNA upstream 461688 3103182 ~ 3127749 (-) True XLOC_010383
TCONS_00020429 mRNA upstream 822233 3463727 ~ 3678976 (-) True XLOC_010385
TCONS_00020424 other upstream 94182 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020433 other upstream 1568983 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020438 other upstream 1885987 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020445 other upstream 1974167 4615661 ~ 4619765 (-) False XLOC_010398
TCONS_00020450 other upstream 2071170 4712664 ~ 4719385 (-) True XLOC_010400

Expression Profile

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