RNA id: TU557495


Basic Information

Item Value
RNA id TU557495
length 1730
RNA type TUCP
GC content 0.39
exon number 2
gene id CI01000340_00787534_00791061
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 786551 ~ 791409 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTTTGCCTGCAGGCTAAATTTGCTCTCGATAACAAGTATAAAAGAACACCATCTTCTCATTCTTATCAAAAAGAATACTTACAGTTACAGAACTGCTGCGGATGATACAGAAGACTTGGGAAAATAGGCAAGCATTAGAAAAAAATGCCATGGGAAACTATCACAGGAAACAAAATGACAGGGTGTTTGGTTGAACACCATTGTCTTTCTTGAATTATTTTGTGCAAAGTAGCAGGGAAATCAGGCTTAGTATAGGTAAAAAAATTATTCCATCTGGAGTCTTTATACTAGCATTCTAGAGTTTGACTGTGTGCTGCTTTTGTACACTGGCCACTAACAGAGAGGATGAGTAAGTGTAAGAAAGAGCTGAGTGAGAGAGAGAAAGAACGGTTGCTCATCCGTAGGGCCAGCGGAGCCAACGCCTCTCAGCTGGCTCATATGGAGAAGATGCTACAAGAAACCAAAGGCCTGCTGGAGAAGAAGACAGAAACGGATTCAGAAAGCAAAGCCTGTGGTGACACTATGGTGTCTGATCTGGAGCAGAAGGTCCAGCGCAGCAAGCGAGACCGTCGTAACTCCCTCCATCGCACACAGCTGCTGGAGAGTCAGATGAAGACGGTTCGCGGTGAGCTTGTGGGCACGCTGGACCACCTGGAGGAACTGCGCAACATATTGCGACGCTCACAGCAGAAATCAGAAGAGCGAGAAGCAGCCATGCAAAAACTTGCTGCAGGCCTGAGGTGAGGCAACAGCTGTCCACCTTCAGTTCATGGGTTACCACAACTCTCATCGTGAAGACTTGAGACACCACTGTTCATCTGAAATATTTGTTTGACTGCACATCCAGAATGTCATCATTTTTCACATTGGCTCACACATTCCTGTGCAACCAGATGCTGTTGTAATATCTCTGGTAAATAATTAAAGCATGCCACAGTTATTTAAAGGGCATGTGTTTACCCTCCAAAGATAGACAGTTTCTGAAGTGTGTGTCTGGTAGCATCCTGTTTTTATTTCCTGTTTTCACTGAAATGCAACCTTAAACCACAATTTACAATTTAAGTATATAGACATCCACTTAATGCCCTGTTAACTTGTGAAATAAAATTCACACCCTGTCATATTTGACATGTTGTGGTGCCAATTTACCATGTGTGTGATGGCTTCAGGCAAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCTTCACAGGATTTGTTTTGTAAAACAAAACAGATTGTGTACAATGTCTTAGCTTTGAGTTGCTTTATATGTGGTATAAGGAAAGTGTCAAATGAGTCCAGCATTTCTTGATATATATAGTCACCTATATTCATAGCTGCTTTTGCCTTTTTATTTTTTATAAGGTTTATTTCTGTGAACTTTTACATGATCTGCAATATTACAGTAGCCTACGTGCTTTTTCAACATTATTTTTAATCACCAATTCAGTAATGTAGGTACACTTTAAAGATTGTGTGTGTTTATGATTTTATTCATTAAAATATTGATATGTCCTCTAGGTTGTACTTTATGAAAAGAAAACAGAAACTTTATATCCATTTCAGTTGTGGATTTCCTCCCCTTATATCCTAAAGATCACTTTTTCATGTTGCTTTGAGGAGGTTTAGTATAAGATTCAATCCTAAATCTACTTTTCAGATCCTCTGCTTTGACTGAAGTTCTCTCATACTTCGTGACCTCATTCCCCTCTTGGTAGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557473 lncRNA downstream 48245 736957 ~ 738306 (-) True G485801
TU557570 lncRNA downstream 97527 688022 ~ 689024 (-) True G485888
TU557471 lncRNA downstream 110155 574396 ~ 676396 (-) False G485800
TU557472 lncRNA downstream 110155 574396 ~ 676396 (-) True G485800
TU557482 lncRNA downstream 287544 496677 ~ 499007 (-) True G485805
TU557643 lncRNA upstream 140192 931601 ~ 932122 (-) True G485954
TU557652 lncRNA upstream 150998 942407 ~ 943669 (-) True G485962
TU557676 lncRNA upstream 186779 978188 ~ 978858 (-) True G485986
TU557635 lncRNA upstream 194564 985973 ~ 1011769 (-) False G485947
TU557640 lncRNA upstream 195817 987226 ~ 988409 (-) True G485951
CI01000340_00764259_00771823.mRNA mRNA downstream 13253 763712 ~ 773298 (-) True CI01000340_00764259_00771823
CI01000340_00750353_00755174.mRNA mRNA downstream 31377 750139 ~ 755174 (-) True CI01000340_00750353_00755174
CI01000340_00739436_00741531.mRNA mRNA downstream 44914 738405 ~ 741637 (-) True CI01000340_00739436_00741531
CI01000340_00683967_00684845.mRNA mRNA downstream 101706 682794 ~ 684845 (-) False CI01000340_00683967_00684845
CI01000340_00641314_00671233.mRNA mRNA downstream 115318 641293 ~ 671233 (-) True CI01000340_00641314_00671233
CI01000340_00798980_00828835.mRNA mRNA upstream 7571 798980 ~ 828835 (-) True CI01000340_00798980_00828835
CI01000340_00840521_00859645.mRNA mRNA upstream 48665 840074 ~ 859645 (-) True CI01000340_00840521_00859645
CI01000340_00878949_00880017.mRNA mRNA upstream 86363 877772 ~ 882231 (-) True CI01000340_00878949_00880017
CI01000340_00922398_00926008.mRNA mRNA upstream 130664 922073 ~ 926926 (-) True CI01000340_00922398_00926008
CI01000340_01119764_01121682.mRNA mRNA upstream 328280 1119689 ~ 1123636 (-) True CI01000340_01119764_01121682
TU557449 other downstream 460835 325334 ~ 325716 (-) False G485786
TU557450 other downstream 460888 325334 ~ 325663 (-) True G485786
TU557403 other downstream 704456 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU559770 other upstream 1104392 1895801 ~ 1902272 (-) True G487884
TU560772 other upstream 3214396 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 3715787 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 3808811 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 4529344 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778

Expression Profile