RNA id: TCONS_00021779


Basic Information

Item Value
RNA id TCONS_00021779
length 404
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_010384
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 3348006 ~ 3348709 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGCAAATATTTTACCCTATATTGTATATTAGACTTTCACTTAGTCCCCTTGCTTGTCTTTGCTGGCAGGAGCGGACTGCAGTCGTAACTGGTTTTGGAAGTCTTCGTTGGGGGTGTAAAGTCATCCTGCCGTGGGTCGATCCTGCAGCTGATGCGCCTCCTGGAGGAATCCTCACCAGACGCCACATCACATTAAGGGTTCGGAGGtcacggaagaaagtgaagagctgAAGAAATGAGGAGCCAGATCCAGATCCggcttgttccggcacaaattaagcctttCCTACATgccttttagatattttttaacgcgggaaatacatttgttttactttatggttgttttaaaagttttaaaacacgtactgtatattttataaacatgCCCACATAtattaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022075 lncRNA downstream 535998 2809717 ~ 2812008 (-) True XLOC_010380
TCONS_00020423 lncRNA downstream 697631 2647513 ~ 2650375 (-) True XLOC_010377
TCONS_00021778 lncRNA downstream 1398937 1948025 ~ 1949069 (-) True XLOC_010372
TCONS_00022074 lncRNA downstream 1995000 1350971 ~ 1353006 (-) True XLOC_010369
TCONS_00021777 lncRNA downstream 2129436 1204978 ~ 1218570 (-) True XLOC_010368
TCONS_00022076 lncRNA upstream 436165 3784874 ~ 3796633 (-) True XLOC_010386
TCONS_00022078 lncRNA upstream 830327 4179036 ~ 4179914 (-) False XLOC_010388
TCONS_00022077 lncRNA upstream 830327 4179036 ~ 4179914 (-) False XLOC_010388
TCONS_00022079 lncRNA upstream 830327 4179036 ~ 4179967 (-) True XLOC_010388
TCONS_00020434 lncRNA upstream 886018 4234727 ~ 4238361 (-) False XLOC_010391
TCONS_00020428 mRNA downstream 220257 3103182 ~ 3127749 (-) True XLOC_010383
TCONS_00020427 mRNA downstream 477484 2847565 ~ 2870522 (-) True XLOC_010382
TCONS_00020426 mRNA downstream 529836 2814233 ~ 2818170 (-) True XLOC_010381
TCONS_00020425 mRNA downstream 540479 2745006 ~ 2807527 (-) True XLOC_010379
TCONS_00020421 mRNA downstream 697651 2637491 ~ 2650355 (-) False XLOC_010377
TCONS_00020429 mRNA upstream 115018 3463727 ~ 3678976 (-) True XLOC_010385
TCONS_00020430 mRNA upstream 662258 4010967 ~ 4031386 (-) False XLOC_010387
TCONS_00020431 mRNA upstream 662573 4011282 ~ 4026265 (-) True XLOC_010387
TCONS_00020432 mRNA upstream 848223 4196932 ~ 4203022 (-) True XLOC_010389
TCONS_00020436 mRNA upstream 938833 4287542 ~ 4317879 (-) True XLOC_010392
TCONS_00020424 other downstream 612207 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020422 other downstream 706512 2638359 ~ 2641494 (-) False XLOC_010377
TCONS_00020433 other upstream 861768 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020438 other upstream 1178772 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020445 other upstream 1266952 4615661 ~ 4619765 (-) False XLOC_010398
TCONS_00020450 other upstream 1363955 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020457 other upstream 1712790 5061499 ~ 5061629 (-) True XLOC_010404

Expression Profile

//