RNA id: CI01000340_03750211_03772917.mRNA



Basic Information


Item Value
RNA id CI01000340_03750211_03772917.mRNA
length 1779
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000340_03750211_03772917
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3749935 ~ 3773916 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACCTGCTACCTTGAAATATGAAACACCTTTCATCTCGTCCGCCAATCAAAGGATGTTGTGCGGCGAATAAAAGTATCTACACCACCAAGGAAAGAAAATAGTAATGGTAATAGATTCAATAGTGATAATGGTAATGGACTCTTTTATTCTGACTAGTTACTTTAATCTATCATACAACATCTAGAAGAAAAAAAACTAAGAATCATTTAGGCCTGAGACTTATTGTTCATGAAGTGTACAACCCAGGCTCAATGGAAATATGTGCCTGTGGTGACATCTCTGCAAAATATCACATTGCTTCTTGAACATTTTGTGACCCTTTCAAAGTGAAATGTCCTGTGAGTGGCGCTAAAAACATGTTCAGTTTTATTTGAAATAGATTACTGTGAATCTGGCAATGTTTTATTATGTTGGTTGTTCTATGAATTGGCATAGTTTGGAAATTAAATGTCCAGTCATTGGCGCTAAAAGATTAATGCTCTATTGTGTTTGAAAATAATGTACCACCTATACTAAACCCTACCCTAAACCTAAACGATTGTGTAAAAAAAAAAAAAAAAAAAAAGTGAAGCAACAATGCCCTTTTAGCTTGTTTCTACGAGTCTTTGAGCTCTTTTATCATTACTCGTGTTACACAGGAATCGTACCCATGCAATCCGCATCGCAAGTGCAGTGCTGTACCAGGTGAGCTTCTGAGCAAGTTTACTACATTAGAAGGGCCATATACTGTATTAGGAGCTGGTTGTTGGCGTTTTACTGCCACTAGTGTTCATTACTTTTGGAAACTGCCATGAAGTATGTATAGGTACCAAGAAAAAAAATGTAGGTAGGCACATTTTTCTAATGAGCCTAAGCTGGAAATGTACCAACAGATGTTGCACGCTTGAAGGAGCTTTTCTGAGTAACAGAACCTCTGAGCAGGTATGGTCATGAGCATTAGAGACGCTTGGTATAGCATCAAAGATCTAGGACAGCAGCCGAAGGAGGTCTCTTGTGAGGATGAATTGGCTTTTCCTGCCTTTTCTAAGTCAAGATAATCAGGCTAGATCTAGTGCAGCCAAGAGAGAGAAAATTCAGAAAGAGACAGAGACTGGGAACAACAGTAAGCTACATTATTGTCCACTGAAGCCCAATAACAAGACAACAGTTCATAACAGAATCATCTTAATCAGATCTGACTCTGAGCACACCTGCCTGGCTGACAGCCCCCAGAGACAAGATTGTGGTTTAATGGCACAATGTTTCTTCTGTCCCACAGCCAATGAGAGCAGAGCAGTTGCTAGCACTGTGCTGACGTTAACATTTAACCATGGGATGGTGACGGGGAAAGACTCTAGGGCTGCAGATAAGACCGTTGCCATGGTCCTGAAGGAGATACCCAATAAGGCGTCCTCAGAAGGCAAGCCCCTCCTCACGGTGACAAACAAGACAGAACAGCTCAATAAATCCTCTGTCAACAAGATTGCTATTGAAATAATCAGACTAATAAGACTAATCAGTTAACAAAGTAGCCGAACTGTTCTGTACCGTGACTGTAGTTATCTGCTCTAATTACAAGAATGAGTTTTGTCCCCTTAATAATTCCTATTAATGTCAACAACCAATTTGTGCCAGAAATGAAAAACAGTTTTAAACAGAATACAGGGCAATCTAATTAAGTTGTACAGCCCAAAATGTTTCCAAAACAATTCTCCCCCTCTCATTATGGCCCTTGTTCTGCTGGCATTCACAAGGGAGGAAATTATGCTTTTTTAATAAGGCTTAGAGGGGCAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU560561 lncRNA downstream 128303 3618019 ~ 3621632 (-) True G488582
TU560650 lncRNA downstream 205339 3544379 ~ 3544596 (-) True G488664
TU560649 lncRNA downstream 205885 3543462 ~ 3544050 (-) True G488663
TU560637 lncRNA downstream 224335 3525348 ~ 3525600 (-) True G488651
TU560635 lncRNA downstream 228339 3521372 ~ 3521596 (-) True G488649
TU560567 lncRNA upstream 89236 3863152 ~ 3863573 (-) True G488588
TU560547 lncRNA upstream 93888 3867804 ~ 3869876 (-) True G488568
TU560735 lncRNA upstream 97768 3871684 ~ 3872011 (-) True G488748
TU560737 lncRNA upstream 100542 3874458 ~ 3874738 (-) True G488750
TU560572 lncRNA upstream 118853 3892769 ~ 3893172 (-) True G488593
CI01000340_03713291_03747080.mRNA mRNA downstream 2663 3712753 ~ 3747272 (-) True CI01000340_03713291_03747080
CI01000340_03670820_03675367.mRNA mRNA downstream 74568 3670713 ~ 3675367 (-) True CI01000340_03670820_03675367
CI01000340_03622734_03659141.mRNA mRNA downstream 90779 3621970 ~ 3659156 (-) True CI01000340_03622734_03659141
CI01000340_03607549_03614126.mRNA mRNA downstream 135809 3607130 ~ 3614126 (-) True CI01000340_03607549_03614126
CI01000340_03561521_03596697.mRNA mRNA downstream 153238 3561479 ~ 3596697 (-) True CI01000340_03561521_03596697
CI01000340_04086574_04090310.mRNA mRNA upstream 312314 4086230 ~ 4090310 (-) True CI01000340_04086574_04090310
CI01000340_04277249_04284722.mRNA mRNA upstream 503223 4277139 ~ 4285407 (-) True CI01000340_04277249_04284722
CI01000340_04362537_04371224.mRNA mRNA upstream 588459 4362375 ~ 4371224 (-) True CI01000340_04362537_04371224
CI01000340_04381260_04383972.mRNA mRNA upstream 607168 4381084 ~ 4383972 (-) True CI01000340_04381260_04383972
CI01000340_04384950_04386594.mRNA mRNA upstream 610894 4384810 ~ 4386594 (-) True CI01000340_04384950_04386594
TU559770 other downstream 1847663 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 2958526 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 3424219 325334 ~ 325716 (-) False G485786
TU557450 other downstream 3424272 325334 ~ 325663 (-) True G485786
TU557403 other downstream 3667840 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 231889 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 733280 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 826304 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 1546837 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 2409374 6183290 ~ 6220642 (-) True G489516

Expression Profile