RNA id: TU559057



Basic Information


Item Value
RNA id TU559057
length 923
RNA type TUCP
GC content 0.45
exon number 2
gene id CI01000340_04399692_04401164
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4399419 ~ 4401496 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGGCAGTAAAGCACCTAAATACCTGCTGCCCTTTGTTTTTCGATCAAAGTTGTTTGACTTGAGGGGATCAAGTAAGTGTTGGGTGGGGTTTGGACAGGATGGAACTGTCCAACGTGAGCCGTCCAACATGCCTCCATAAATTGGGGTCACGTCTCATGAGAAAATCAGATGTTCACTAGACCTGAGAGAGGTTAGCAGAAGATAGAGAAGACCTTAGAGAGACAGAAGGAAACGTAAGGGCAGAACAGGAGGAGCACGGACACTGAAGCCACTATGAGAAGGTTATATTCTCCTGCTGTACTGCTGCCAGTTCTGCTGCTGTGTGCTGTGTGTAGTGTGTCAGACGTGCAGGCTGATGTGGGGACCGTCAAGCTGTGTGGCCGAGAGTTCATCCGTGCCGTCGTCTACACGTGTGGGGGCTCCAGGTGGAGGAGGTTCAGCAGTCCGCAGGATATGGAAGGGTTTTTTAATGGAGATCTAAGCAGCCCTGAGGATCCTAGTGAGAGTCTGGGATCTGACCTGACCAGGCGAGACCTGAATGGTTGTTGTCAGTTTGGCTGCAAGAAAAGTGACCTCACGTTGCTCTGCTGAGGACTGAACTTGCGTTTTCTATTTGTCTCACTATGTTTTCTTCCAAGTTGACTTCAGATGAATATGAACGCTTCTCTATAAAGTGTACAGTCAGTAGGAGTTCATATAACAACTTAATTTGCCAATAGATTATGCTAATTTACATAAAAAGCCTGTCTGTCTTAGATCATTCTGCTACACTTGTGCTTTAAACTGCACCATGAAAAGAGGTTGAATATCAACAATGAAATTGTGTTGAGGTGCAGAGCAGTAATTGTGGCGATTAAGTTGTTTTAATTGTAAATTGTATTTTGTGAATAAACATTAATGCAAATGCATCAAAGGTGTTTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU559081 lncRNA upstream 2809 4356166 ~ 4396610 (+) True G487260
TU559079 lncRNA upstream 45317 4353670 ~ 4354102 (+) True G487258
TU559078 lncRNA upstream 45902 4353310 ~ 4353517 (+) True G487257
TU559077 lncRNA upstream 46867 4352317 ~ 4352552 (+) True G487256
TU559076 lncRNA upstream 48383 4350820 ~ 4351036 (+) True G487255
TU559105 lncRNA downstream 26078 4427574 ~ 4429926 (+) True G487280
TU559108 lncRNA downstream 30603 4432099 ~ 4432647 (+) True G487282
TU559117 lncRNA downstream 39407 4440903 ~ 4491970 (+) False G487289
TU559118 lncRNA downstream 39407 4440903 ~ 4491970 (+) False G487289
TU559116 lncRNA downstream 67601 4469097 ~ 4491970 (+) True G487289
CI01000340_04387653_04393950.mRNA mRNA upstream 5300 4387653 ~ 4394119 (+) True CI01000340_04387653_04393950
CI01000340_04374493_04379773.mRNA mRNA upstream 18934 4374316 ~ 4380485 (+) True CI01000340_04374493_04379773
CI01000340_04310811_04341754.mRNA mRNA upstream 57665 4310811 ~ 4341754 (+) True CI01000340_04310811_04341754
CI01000340_04273797_04274531.mRNA mRNA upstream 124886 4273597 ~ 4274533 (+) True CI01000340_04273797_04274531
CI01000340_04249473_04264824.mRNA mRNA upstream 133412 4249473 ~ 4266007 (+) True CI01000340_04249473_04264824
CI01000340_04564752_04566790.mRNA mRNA downstream 163115 4564611 ~ 4567156 (+) True CI01000340_04564752_04566790
CI01000340_04660938_04668996.mRNA mRNA downstream 258088 4659584 ~ 4669322 (+) False CI01000340_04660938_04668996
CI01000340_04809014_04832590.mRNA mRNA downstream 407518 4809014 ~ 4832590 (+) True CI01000340_04809014_04832590
CI01000340_05105114_05112407.mRNA mRNA downstream 702863 5104359 ~ 5112713 (+) True CI01000340_05105114_05112407
CI01000340_05165855_05175759.mRNA mRNA downstream 763750 5165246 ~ 5176372 (+) True CI01000340_05165855_05175759
TU558935 other upstream 416874 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 1467619 2930091 ~ 2931800 (+) True G486806
TU557142 other upstream 4086174 311792 ~ 312038 (+) True G485516
TU557027 other upstream 4231785 163286 ~ 167634 (+) True G485427
TU556971 other upstream 4285650 106885 ~ 113769 (+) True G485373
TU559265 other downstream 262813 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU561697 other downstream 2292725 6694221 ~ 6700788 (+) False G489634
TU562819 other downstream 4637316 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 4723688 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 4833477 9234973 ~ 9237559 (+) True G490839

Expression Profile