RNA id: CI01000340_04598932_04627160.mRNA


Basic Information

Item Value
RNA id CI01000340_04598932_04627160.mRNA
length 934
RNA type mRNA
GC content 0.36
exon number 4
gene id CI01000340_04598932_04627160
representative False

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4598714 ~ 4627447 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAATGTGATTTTTTTTTTAATCATAATTACTTGTTTTATTTTTTACTTAGTTGTGTGAAGTAACTTTTTTTTTTCACGTGCACTGATATTGAACAAATTCGTAAATTGGAAAACATTCAAAAATTTCACCAACACAATGTAATGTTGATTATAATGTAGAATTGGTGAGTTATTTTTAGATTGTTTTGAAAATAAACATCTCTGCCTTGCCTGAAATGTTCTTGGAAAATCCTTTTCGGGGCTGACTGGACAGAAAAATGGAATTCCCCTTTTTATGTGTCTAAAGATGAGCGACTGTCATATAAAAGACACATTGCCAGATACTTTTCATGCCACATATTCACCCAATTCAATGAAGTCTGTGACAGCGGCAATATTTAAAGAGAGTCAGCGGAGCAGGCCTGTGCAAGACAGGGAGAGGAAAACTTCACAGAAGATGAGGAAGAGCCGGAGCGTTCTAACTGTGTCACCTAATGAGGACAGTAAAGAGCCTCCGGACACCAGACTAAGTGAATCTTTCACCTCTTCTGGTTGCACGCTGGGGGTAGACCTGCGCAGAAGGAGGCGCCGTTTCTCCGCACACTGGTTATTTAAGCTGCAGCTGCTCAGTGTTGTTGCCATGAGGAGAGGGAAATCTGTCTGGTTGCAGTTGGCAACACAGCAGAAGCTGGTTTATAATCATCAATCAATAAATTTGTCTGGTAAAAAGACGTGATTTGACATCAAAGTTGCAATAGTCTGATTGCCCCAAAGCAAATGCACCAATGAGCCCCAACTACATTTGTGCTTAGATACTTGTAATACATTATAATTTTATTTGTTTTTTTCTTTGTTTTTTTGTTTTGTTTTGTTTTGTTATTTCTATATATTTCAACTTTTTAAATTTCTATATATTTCAACTTTAAAACACATAAATTGTATTTATTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560826 lncRNA downstream 328227 4270218 ~ 4270487 (-) True G488829
TU560823 lncRNA downstream 330842 4267656 ~ 4267872 (-) True G488826
TU560552 lncRNA downstream 440192 4125363 ~ 4158522 (-) True G488573
TU560787 lncRNA downstream 525259 4073118 ~ 4073455 (-) True G488797
TU560785 lncRNA downstream 564335 4034146 ~ 4034379 (-) True G488795
TU560886 lncRNA upstream 60567 4688014 ~ 4693632 (-) True G488888
TU560947 lncRNA upstream 90133 4717580 ~ 4717841 (-) True G488948
TU560949 lncRNA upstream 94394 4721841 ~ 4722055 (-) True G488950
TU560950 lncRNA upstream 95401 4722848 ~ 4723114 (-) True G488951
TU560953 lncRNA upstream 100239 4727686 ~ 4728165 (-) True G488954
CI01000340_04586637_04588967.mRNA mRNA downstream 9351 4586379 ~ 4589363 (-) False CI01000340_04586637_04588967
CI01000340_04491232_04534682.mRNA mRNA downstream 64032 4490608 ~ 4534682 (-) False CI01000340_04491232_04534682
CI01000340_04403305_04410695.mRNA mRNA downstream 188019 4403156 ~ 4410695 (-) True CI01000340_04403305_04410695
CI01000340_04384950_04386594.mRNA mRNA downstream 212120 4384810 ~ 4386594 (-) True CI01000340_04384950_04386594
CI01000340_04381260_04383972.mRNA mRNA downstream 214742 4381084 ~ 4383972 (-) True CI01000340_04381260_04383972
CI01000340_04685622_04711254.mRNA mRNA upstream 58003 4685450 ~ 4711254 (-) True CI01000340_04685622_04711254
CI01000340_04748822_04770480.mRNA mRNA upstream 120834 4748281 ~ 4770480 (-) True CI01000340_04748822_04770480
CI01000340_04787190_04796424.mRNA mRNA upstream 159491 4786938 ~ 4796424 (-) True CI01000340_04787190_04796424
CI01000340_04840574_04911814.mRNA mRNA upstream 211856 4839303 ~ 4914305 (-) True CI01000340_04840574_04911814
CI01000340_04918923_04993041.mRNA mRNA upstream 291167 4918614 ~ 4993274 (-) True CI01000340_04918923_04993041
TU560860 other downstream 2453 4507196 ~ 4518120 (-) True G488862
TU560772 other downstream 592266 4005805 ~ 4006448 (-) True G488782
TU559770 other downstream 2696442 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 3807305 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 4272998 325334 ~ 325716 (-) False G485786
TU561021 other upstream 693306 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 1555843 6183290 ~ 6220642 (-) True G489516
TU561564 other upstream 1693010 6320457 ~ 6327372 (-) True G489511
TU564040 other upstream 4171754 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 5394445 10021892 ~ 10027983 (-) True G491883

Expression Profile