RNA id: CI01000340_04748822_04770480.mRNA



Basic Information


Item Value
RNA id CI01000340_04748822_04770480.mRNA
length 3471
RNA type mRNA
GC content 0.50
exon number 19
gene id CI01000340_04748822_04770480
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4748281 ~ 4770480 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATGGACGGAAACTATGGAGGGGGACTTCTGGATATGGTGAAAGGAGGTGCTGGAAAGTTCTTCAGCAACATCAAGGACAACCTCAAAGACACCATCAAAGACACGTCTACCAAGGTTATGAACCAAGTGGCCACTATTGGCATGAGAATAGATATGGGCACTCGCACAGTGATGGTGTTGGTTCGTTACAACATGGCTTCTGGTCTCTCTGAGATTGACACAAGTATTGAAGAGAGGCTGGTGTGCAGTTATCCAGAGGATACTCTGGTGATGCATGGGATAGCTGAGCTTCCAGAACTTCTGAACTATTCATGTGCGTTTATCACTCAGCTGAAAGGAAAGCATTCAACACTAATGGGTAGACATAGCACAAAGCTCTTATGTAATGTAGCATTTTACCCCCGACTGACCCAGAAGCAGATCAGATCCACCAGGTTACTTAGGGTGCTCTTAAGTCAGAGAGCATTATTGAATTCAGTGAAAATTAAATGTTCTATTAGATATACAAAAGGAGAGTTGGACATTGCCTACATCACCTCACGCATTATCGTGATGTCATATCCTGCTGAGGCGGTGGAGATGGGCTACAGGAACCACACAGAGGATATCCGTTCATTTTTGGACTCACGGCATGCCGACCACTACACTGTTTTCAACCTGTCACAGAGGAACTACCGAGGGGCCAAGTTCTCCAACAGAGTTTCAGAATGCAATTGGCCTTCCAAGCAGGCCCCGAGTCTTCACAACCTATTTGCCGTGTGTAAGAATATGTACAACTGGCTCAAGCAAAACCCCAAGAATGTGTGTGTGATCACCTGTTCGGATGGCAGAGCTCCTTCGGGCGTGCTGGTCTGTGCCATGTTCTGTTTCTGCCACCTTTTTGCCAACCCGGTGCCAGCCATGCATCTTCTCAGCGCCAAGAGGCCTGGATCTGGCTTGTGGCCCTCCCATAGGAGGGAACACAGGATTCAAGAGGGCAAAGTGGTCTTTCCTGTAGGAGTGAGTGCCCAAGGAGATGTGGTGATTTCAGTCTATCACATGCGTTCCCATGCACTTCAGGCCAAGGTAACAAACACCCAGATATTCCAGATTCAGTTCCATACTGGTTTCATCGCCCCCGGCACAACAGTCTTAAAGTTTATGAAGACAGAGCTGGATGCCTGTGATTCTCCAGAGAAATACCCACAGCTGTTTCATGTGCTGTTAGACATTGAGGTTGAAAGCACAGAGAAACAGAAAGATCTCACCCCACCGTGGGAGCAGTTTCCCACCAAAGACCTGAGCCCCAACGTGCTTTTCTCCTGTCATCAGGAACACCAGGATGCACTTGCTGTTGCAGATGAAATGGAGGGCTTGGACTTGGAAGATCCTGCTCAGGGCCATGGGAGTTGCGGAGGCAGAGTGGGTCCGAATGAGGAGAGTGAACCCTCAGATGATGAGATGCTCTCCCTTTCTAGCCAGCAGAGCAACACGAGCAATGAAAAATCAAAAGGGCCTAAGAAGCCGGAGCCCCAGTCTGCAGCGGCCCCTCCTCCAGCAGCTGAGGAAGTAGATCTACTGGGGCTGGACGGTGATGCAGCTAAGCTTCCTCCATCCTCCCCACAACCTCCGACCACGAGTACCACCACAGACCTGCTGGGGGACCTGTTTGGAGCTCCGCCCACACCGCAGCCGGCCAGCGGCCCCACCTCTGCTCAGTCCACCCCGCGAAGATCCACAACTTCTTCGTCACCCTCTTTCGACCCATTCGGGTCTGGGCCCGCACCCACACCCGCCTCTAAGCCGCAGGACTTCATGGGGGCGTTCCTGGGTCCAGGTAATATAGGGCAGCCAGACCCCTTCCTGCATGCTGCACGATCTCCGTCTCCTACAATGCAGAACATGGGCATGGGTCGCAGTTCACCTGTTCCACCCACTACTCCCTCTGTCAACATCCAACAGCAGAGCTCTACGGGAGCATGGGAATGGAACAAACCAGCTCCTGCAGGCAAGTTTATTTGGAACACAAGATGTGCCATGGGGACACCTGGAGGTTTTGGGATGGGAAGTAAGTCTGCCAGCACTAGTCCAACCAGCTCAGTTCATGGGACTCCCACCCACCAGGCCAAACCCAGCACTCTGGACCCTTTTGCAGATCTAGGTAACCTAGGAGCCGGACTGGGAGGAGGTGGTTCAGGATTCTCCAGCAAGCCCACCACACCTACTGGTACTGGAGGAGCATTTCCGCCCATGGGCTCCCCCCAGCGTCCTGCTCCCTCTCCTCAGCACACTGCCTCTGGAGGCTGGCATCCCAGCACAGGCTTCCCCTCATGGCAGCCCGGAGGTGGGGCTCAATGGCAGCCGCCGGCCCAGGGTGCACAACATCAGACCCCACCTAAAGCACCAGGACCCTCTATGCCCCACACTTCACCACAGAACAGACCCAACTACAATGTCAGCTTCTCCACCATGGGTGGAGCATCGCCAGGAGCCACTGGAGCAAAAGCACAGCCTAACATGGGAACCAGACCAAAGGTTTCGGCTGCTAACTTTGATGACCTACTCTCAGGCCAGGGCTTTGCTGGCTCAAAGGAGAAGAAAGGGCCAAAAACCATAGCAGAAATGAGAAAAGAGGAGATGGCAAAAGAAATGGACCCAGAGAGACTCAAGATTCTGGAGTGGATTGAGGGGAAGGAGAGGAACATCAGAGCGTTGCTGTCCACCATGCACACGGTGCTTTGGGAGGGGGAGACGCGCTGGAAACCTGTAGGCATGGCTGACCTTGTCACACCAGAGCAGGTGAAAAAGGTTTACCGCAAAGCTGTGCTGGTAGTACATCCTGACAAGGCTACTGGACAACCCTACGAACAATATGCCAAGATGATTTTTATGGAACTAAATGATGCCTGGTCAGAATTTGATAGCCAAGGACAGAAAGCACTGTACTAAGACTTACTGTATATGATCAAAACCAGTCAGCAGTTCCTGCCCAGATTAGACGCCCTGCAACCCAAAAGTCCTTGAAACGCTCCTTTGTTATCTCTCCCGCCTCCAGGACCCTGCTTTATAGAGACGTCAGAGCTTACATCTACAGTATAGTTGTGTGTATCTCTCTATCGATCATGCACTAGGCCAACATAACTGCTGTATGAGAAGACTGCTGGTGGAAAAAGTAGCATTCAGCATTGTTTTAAAAACTCTTATTTGTGTCTTTCCCAGGACTCGCCTACATAACAAAGTTTATACTTTGTTGTTACACAGCTGTGAAATATGAACATTATCAGTCAACCAGGTCATCATATAACGTTTGGTAAAAATTTATTCAGGAGCCTTCGGATGAGTTTTTGATTTATTGAAGAGGTTTAGTGCTAAAGGAATCAAATATGTCTAGACACTCTGCAAGACAAGCCACACGCTGTCACGGCTTGCAAAACTTTGTTAAACAACACAAAGTTTATTCCAAGTCCTTCATAGAGAGTTATTTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU560953 lncRNA downstream 20116 4727686 ~ 4728165 (-) True G488954
TU560950 lncRNA downstream 25167 4722848 ~ 4723114 (-) True G488951
TU560949 lncRNA downstream 26226 4721841 ~ 4722055 (-) True G488950
TU560947 lncRNA downstream 30440 4717580 ~ 4717841 (-) True G488948
TU560886 lncRNA downstream 54649 4688014 ~ 4693632 (-) True G488888
TU560874 lncRNA upstream 27843 4798323 ~ 4798590 (-) True G488876
TU560847 lncRNA upstream 28317 4798797 ~ 4800530 (-) True G488849
TU560965 lncRNA upstream 224408 4994888 ~ 5003749 (-) True G488965
TU560971 lncRNA upstream 238173 5008653 ~ 5008993 (-) True G488971
TU560851 lncRNA upstream 319755 5090235 ~ 5132749 (-) True G488853
CI01000340_04685622_04711254.mRNA mRNA downstream 37027 4685450 ~ 4711254 (-) True CI01000340_04685622_04711254
CI01000340_04598932_04627160.mRNA mRNA downstream 120834 4598714 ~ 4627447 (-) False CI01000340_04598932_04627160
CI01000340_04586637_04588967.mRNA mRNA downstream 158918 4586379 ~ 4589363 (-) False CI01000340_04586637_04588967
CI01000340_04491232_04534682.mRNA mRNA downstream 213599 4490608 ~ 4534682 (-) False CI01000340_04491232_04534682
CI01000340_04403305_04410695.mRNA mRNA downstream 337586 4403156 ~ 4410695 (-) True CI01000340_04403305_04410695
CI01000340_04787190_04796424.mRNA mRNA upstream 16458 4786938 ~ 4796424 (-) True CI01000340_04787190_04796424
CI01000340_04840574_04911814.mRNA mRNA upstream 68823 4839303 ~ 4914305 (-) True CI01000340_04840574_04911814
CI01000340_04918923_04993041.mRNA mRNA upstream 148134 4918614 ~ 4993274 (-) True CI01000340_04918923_04993041
CI01000340_05011408_05036816.mRNA mRNA upstream 240803 5011283 ~ 5036816 (-) True CI01000340_05011408_05036816
CI01000340_05142661_05150544.mRNA mRNA upstream 371978 5142458 ~ 5150627 (-) True CI01000340_05142661_05150544
TU560885 other downstream 89220 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 152020 4507196 ~ 4518120 (-) True G488862
TU560772 other downstream 741833 4005805 ~ 4006448 (-) True G488782
TU559770 other downstream 2846009 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 3956872 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU561021 other upstream 550273 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 1412810 6183290 ~ 6220642 (-) True G489516
TU561564 other upstream 1549977 6320457 ~ 6327372 (-) True G489511
TU564040 other upstream 4028721 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 5251412 10021892 ~ 10027983 (-) True G491883

Expression Profile


CI01000340_04748822_04770480.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

CI01000340_04748822_04770480.mRNA Expression in each Bioproject

Bar chart with 42 bars.
CI01000340_04748822_04770480.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063968 False 7250 mRNA 0.42 19 NC_007117.7 31279542 ~ 31348999 (-)
bowfin (Amia calva) AMCG00005215 True 2769 mRNA 0.60 17 CM030140.1 19052978 ~ 19067107 (-)