RNA id: CI01000340_05450963_05454017.mRNA


Basic Information

Item Value
RNA id CI01000340_05450963_05454017.mRNA
length 2450
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000340_05450963_05454017
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5450393 ~ 5455519 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCCTTATACAATAAAAATGTAAATATGAGGAACAAAATTACAATGGGTCTGAATGTTTTGTGATGTTTGGTATTTCACCAAAGACAGGGCACCAATAGACTTGATATTCTGATACAAAGATCTGTTTTCATGCAGTATGAAAAAAAAGGGAAACAGCTACAGTAAATAATTATTTTGTCATTGAGATAAACATTTTTTATACTGCAGTATGTTTGTATACTGCATAGATGACATCGCCACATCATCGTTGTTTATGAAATTTAAACCACTTTTTCAAATCATAAATTTTTTGGTCACACTTTAGATTAGAGTCCAATTCTCACTATCAACTAACTATTAACTGCAACATTTGCCTCAATAAACTCCTAATTACTGCTTATTATTAGTTAGTGAGGTATAGTTGTTAAGTTTAGGTATTAGGTAGGAATTGGGTAGGATTAAGGGATGTACAATATGGTCATGCAGAATAAGGCATTAATATGTACTTTATAAGAACTAATAAACAGCCAATATCCAAGTAATATGCATACTAATAAGCAACTAGGTAATTGTGAGACCCTAAACTAAAGTGTTACCTTTTTTTTTTCTTTTTTTTTTTGATGAAATAAATGTTATAAGTAAATGTAAATAAGGGTTTAAGTGTTTCAGGCTCTGCAATTAAAAACTCAAAGTGATCTCAACTCCATGTTGATTAAGACTGTGATTATGATGGTACAAAGAAAGGAACAACTTTAACAAACTTAGCCCAGATATCACAAATCAAGCTCCAAAATGACCATTAGAAGATAATTCTGAGTCTTCTGAAGCCACCCAAACAATACAATTTCATTATTTACATACTTTCATGTTGTTCCAAACCTGTATGACTTTTTCCGCTCCATGAAACACAAATACTGAAATGTTGAAGAATATACTGGTGTTTCTTTTCCATGTAATGAATGCAAATGGGAATTTTCACATACTGTGATGACACACTTATAACAACACTACTTTTTTCCCTTTTGAAGTGGAACTCAACACTGCTTCTTGGATTGACGCTATAGGGAACACCATCAGCGTGACCGGTGTCTGAAACGTGTACAAACACGACAATTTCATTGGCCGACGATAGTCTATGATGTCATTACCTTAGCATAAGTGAGTATAAGAGGACGACCGTGGTGAAGGCTATTGTTATGGATAAAGACTCAAACAAGCATTTCAGGAAGTGTGTGCTTCTGTTACTCAAACACACGATCTGTGTGTTGTGTGTTTGGGTGTGGAGCATGCGCATTCAGTTCTCAAGGGAGCTGAATGTGCCCATTGTGAGAAAATTCACAATGATGAACCTCCGTTCACACTTGACCCTATTCTCGAAGGATGTGGGACAAGTGTCTACACCCCAGTGCTCAGGCCCCGATATAGCCGAGGCACAACAGAGTCTGAAGTTGTGGGGCTTGCAGATCAAGCCGGCTGAGGAGTTTGAAAAAGGTATGGCCTCAAGCAATCTGCTGGATCAGGATGTGCTGTTTCTTGAGTCATCTGGTGCCATACAGCCAGGATGAGGCGGATGTGGTTGAGAAGAGCGAAGAAATCATTTGTAGGGAGCCCTCTCAGCCAGCCACTCTCACATTCGAGGAGCTGCTGGATGTGATCAGATCTGGTTTGGGGTGCAAGAGACAGGAAGTCGCTTGTGGCAGATTCGACGAGAGGTTCCTGTCAGGCCATAACCATCCCCCTCCTATGAGCCATCCTTTTCTTCCCGAACTTCACGCAGAAGGTGTAACACCGCCACAGCCTTTTAAACCATCAGCAACCCTGCAGATTGGCGGAATGCTGGTCATGACGTCAAAACATCATGACATCACCAAGATGATTGACAGTTCTCCGGTCCAATAAGATCAACCTAAGAATAACTCGAAAGCAAGATAACAAAAGAGAGAGAAAAAAAAAACAAAAAAAAACATACGTGGAACGGAACACTTTTGCTGTACTAGTTTCTGTTTATACCCAACTGTGACAACTTCCGCTTATTAGAACCCTAGAAATGTGAAAAGGGTCCACTGTTACACTGAACTCCAGATAAAACAACAAACTGTAATTTTTGTACAGTGTAATGTAACTGTTACTTTTAGCCTATATGATACTCGTTTTAAGACATGTAACGTTTTTACAATTGTTGATCATTAATGTTTACAAAATTGCAGATAAAACATTTCAACCCTAACATCAAGCTATACAAAATATAATTAAATACCCTCACCTTCACATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGATAATGCACTCATTCTTATACAGAATCAATACACATATCTATGTATAATAAGATGCAGGTATGGATTATAAACTATAGGTATTTTCAAAACATTCCAGAATACCTGAACAACAATTACATTGAAATTACAGGAAATTAGCAGTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561086 lncRNA downstream 1288 5448877 ~ 5449105 (-) True G489083
TU561035 lncRNA downstream 167168 5282913 ~ 5283225 (-) True G489032
TU561033 lncRNA downstream 178108 5272060 ~ 5272285 (-) True G489030
TU560876 lncRNA downstream 297705 5151315 ~ 5152688 (-) True G488878
TU560851 lncRNA downstream 317644 5090235 ~ 5132749 (-) True G488853
TU561115 lncRNA upstream 62663 5518182 ~ 5519118 (-) True G489108
TU561174 lncRNA upstream 210999 5666518 ~ 5666834 (-) True G489159
TU561176 lncRNA upstream 215012 5670531 ~ 5670749 (-) True G489161
TU561177 lncRNA upstream 218006 5673525 ~ 5673873 (-) True G489162
TU561204 lncRNA upstream 300846 5756365 ~ 5756630 (-) True G489189
CI01000340_05387790_05394295.mRNA mRNA downstream 55948 5386989 ~ 5394445 (-) True CI01000340_05387790_05394295
CI01000340_05321995_05329778.mRNA mRNA downstream 120178 5321035 ~ 5330215 (-) False CI01000340_05321995_05329778
CI01000340_05196551_05197666.mRNA mRNA downstream 252108 5196128 ~ 5198285 (-) True CI01000340_05196551_05197666
CI01000340_05177681_05192437.mRNA mRNA downstream 257956 5177593 ~ 5192437 (-) True CI01000340_05177681_05192437
CI01000340_05153622_05164991.mRNA mRNA downstream 285344 5153559 ~ 5165049 (-) True CI01000340_05153622_05164991
CI01000340_05562762_05566332.mRNA mRNA upstream 107097 5562616 ~ 5566332 (-) True CI01000340_05562762_05566332
CI01000340_05576979_05643605.mRNA mRNA upstream 121460 5576979 ~ 5643605 (-) True CI01000340_05576979_05643605
CI01000340_05717260_05723962.mRNA mRNA upstream 260684 5716203 ~ 5723962 (-) True CI01000340_05717260_05723962
CI01000340_05739446_05740109.mRNA mRNA upstream 283462 5738981 ~ 5742133 (-) True CI01000340_05739446_05740109
CI01000340_05778950_05780358.mRNA mRNA upstream 323342 5778861 ~ 5780429 (-) True CI01000340_05778950_05780358
TU561021 other downstream 125249 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 791332 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 854132 4507196 ~ 4518120 (-) True G488862
TU560772 other downstream 1443945 4005805 ~ 4006448 (-) True G488782
TU559770 other downstream 3548121 1895801 ~ 1902272 (-) True G487884
TU561569 other upstream 727771 6183290 ~ 6220642 (-) True G489516
TU561564 other upstream 864938 6320457 ~ 6327372 (-) True G489511
TU564040 other upstream 3343682 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 4566373 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 4901665 10360197 ~ 10362404 (-) True G492045

Expression Profile