RNA id: CI01000340_06345631_06346302.mRNA



Basic Information


Item Value
RNA id CI01000340_06345631_06346302.mRNA
length 1948
RNA type mRNA
GC content 0.40
exon number 1
gene id CI01000340_06345631_06346302
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 6345613 ~ 6347560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCTTGGTTTGACTCCAGAATGGTGTTTTAAAACCTCACTGAATAATTTACATAATATTTGCATATTGCATATAGTGGCGGGAGAGATGTGCCATTTAACATACCAGTAACAGTATAACCTGTTCATCATTTTGAATGGAAAAAGAATGTAATAATGCTAAAGTGAAAACCTGTTAATTGCTTACTATAATAAAATGCAGTTTATATATAGTATAATTTATATTGAATTTAATGGGTAATTTCATTTATATAATTTACAGTAAAATGATCATTTATAGGGATGCAGCGATATGAACATTTTGGCCGATACCGATAACTGATAATTCTTTATATTTGAAAGCCGATAACCGATATATTGGCCGATCTCACCACTAAAAGCCATGTCCCAATCACATTATAGTGTTCTCATTATAATGTTATCTAGCCTATATGACAGACTTGCATGGCACATGTTGCACCTTTTTGAAGTGATTTCAATCATATTTCAAGCAATTCAAAACCATAACGGCAGATAGTGCGCATCTGAAGTGTCTCAGCTGAAGGAAATCTATCCATTATTTATTGGTTTATAAAATATTGGCCAAATTTTCTTATCGGGCTGACAACGATAACATTAAAAATGAACATATATTGGCCGATACTGATATGGTGGCTGATATATCGTGCGTCCCTAATAATTTTATAATATATTAAATTTATGGTGAAAACACGTAAAAAGATGTCTCCAGAAGTCCCAGCATGATGCAGCACATTTTGGTATATTTTAAATAATTAATCGTGTTTCTTGCTATTTTCACAATCAGTTACACATTTTTTTTGTTACATTTTATGTTATTTAGTTAATGTTTACAGCTTTATTTTATTGATAAGTGCTACCCTGATGGCATTTTGACAGCCTTTAATTGATCATGTGCCCTTTTATTTTACTACTTGAATTTTTATGGTAGTTATATGTATTTTAAGGTAGAAAATCAGATTTTAGATAGGTTATAAGTAGGTTGGTATATTACAGTATATCAATAATAATTAAATATTCAGTAATAAACTGAAATATACAGACCAAAATGCATTTACATAATGCCTGAAACATTCTCACTGTGAATCTCTTATTGTGAATTGAACGGGATTTTTTTCATGTTTTGTCAACTGTACACATGGCAACTTCTTACCTAATTTCCATCTTGTTTTCTCCAGGAACTGTAGCCAGGTGTCCTCTCACGGTTGGGACCAGTCCTGAGCACCATTAGCAGTGAACATCATGTCAGAGCTGGAGGATTATTCCCCTCCGAGGGGCCACCCCCATCCTGACCCTGCTCGCATCCAGCAGAACCTCCTGGAGGAGCAGGTGGAGCTCTGGTGGTTCAGTGAGCCACGCAAATCCTTATTATGCTACTGCGCTTCAGTGGCCTTGATCTTAGGCTGCGGCCTGGGCGGCGTAGGCCTCCTTTCCACCACCACCAGCCTTTCCAGCGAGTGGCGGCTGGGCGCTGGAACCACTCTTTGCCTTCTCGCTCTGGCTGTCCTCCTCAAGCAGCTGCTGAGCTCCGCTGTCCAGGACATGAACTGCGTGCGTAGCAGGCAACAGATCAACATGATAAAAAGTGGCGGTTTATCTGACGTCCTCATCATGTTGATCACGGGAATATCTCTGCTCATCTCTGGGGCTGTGCTCCTAGACATGGCCTTGGCCTACCACATGCCCAAACCCGGCAAGGCACTGAATGATATGTATATATCTGGGTTGGTGATGCTGGTGGTTGGGAGTTTCACAGTGTTAGCGGTCAGCATTTATGCTGCAGCATCTTTTCTCTTAGAGAGGACAGGGCCTGGACAGAGACGGTGGGAGAGGACAGTGGGGATCTTCAGCATTTCAGGCCAGATGCAGGCAAGGAGAAGAGAGACTGCTTCGAGTCTGGCCCAACTGATATAACTGGGACTGCAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU561576 lncRNA downstream 178581 6148745 ~ 6167032 (-) True G489523
TU561494 lncRNA downstream 401611 5942457 ~ 5944002 (-) True G489461
TU561534 lncRNA downstream 435191 5908415 ~ 5910422 (-) True G489486
TU561506 lncRNA downstream 460189 5883391 ~ 5885424 (-) True G489472
TU561496 lncRNA downstream 470313 5874001 ~ 5875300 (-) True G489463
TU561674 lncRNA upstream 68552 6416112 ~ 6416471 (-) True G489618
TU561675 lncRNA upstream 69625 6417185 ~ 6417977 (-) True G489619
TU561678 lncRNA upstream 72690 6420250 ~ 6420536 (-) True G489622
TU561679 lncRNA upstream 77143 6424703 ~ 6424998 (-) True G489623
TU561916 lncRNA upstream 187883 6535443 ~ 6538194 (-) True G489826
CI01000340_06292679_06306134.mRNA mRNA downstream 39479 6292679 ~ 6306134 (-) True CI01000340_06292679_06306134
CI01000340_06277603_06288451.mRNA mRNA downstream 57016 6277580 ~ 6288597 (-) True CI01000340_06277603_06288451
CI01000340_06260156_06263609.mRNA mRNA downstream 81733 6260085 ~ 6263880 (-) True CI01000340_06260156_06263609
CI01000340_06256040_06258336.mRNA mRNA downstream 87277 6255964 ~ 6258336 (-) True CI01000340_06256040_06258336
CI01000340_06248419_06255089.mRNA mRNA downstream 90448 6247400 ~ 6255165 (-) True CI01000340_06248419_06255089
CI01000340_06374920_06376111.mRNA mRNA upstream 27251 6374811 ~ 6377845 (-) True CI01000340_06374920_06376111
CI01000340_06406898_06410323.mRNA mRNA upstream 57939 6405499 ~ 6411238 (-) True CI01000340_06406898_06410323
CI01000340_06470405_06482135.mRNA mRNA upstream 121586 6469146 ~ 6483180 (-) True CI01000340_06470405_06482135
CI01000340_06503908_06507226.mRNA mRNA upstream 156205 6503765 ~ 6508208 (-) True CI01000340_06503908_06507226
CI01000340_06628894_06640081.mRNA mRNA upstream 281309 6628869 ~ 6640081 (-) True CI01000340_06628894_06640081
TU561564 other downstream 18241 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 124971 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 1020469 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 1686552 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 1749352 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 2451641 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 3674332 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 4009624 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 5326186 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 5719617 12067177 ~ 12106251 (-) False G493266

Expression Profile