RNA id: TU563745


Basic Information

Item Value
RNA id TU563745
length 183
lncRNA type sense_over
GC content 0.41
exon number 1
gene id G491444
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8039098 ~ 8039280 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCTATCACCATTTCTGTTCTCGAATATCTCCTCAATGGACAGATTATCGAAACGTCCAGTAGTACGTAGATTCGTTTGATGATTGAAATGAAAGGAAAACTCTGAAATAAGTTTAATTTCATTATTACACGGTGAAGAGAGAGTTTCTTCCGGACTATTTCGGTTTTCAACGCGGGATTTTGTTGTGGATACCCAGCCTTGTTCAACCTTGTGCCGCCAATGACAAGTTCAGCACCGCGTAACATCCACCTCACTTTTACACGACCACTATGGTGCTTTGGGAATCAATGAAGTGGACGAATATATATGACATTTCCTTGCAGCATCTGAGTCCTTCAGCATCAGAATCTGTTGAAGCCGGTTTAACCTGTTCTCAAGTGTCAAGTCTACCGAATAAAATTGCTTTAAACATCATTGCTGAAATATTCTTCCTGGACTAAGAAACAACAGTTAAAGCCTGTAATTCAAGATGACATCTGCGATCAGCCAAGTGTCATTGAGTGAGCTGCCCATGGATAACTGGATGGCCAATCTACCCAGTGCACTGTGGGATACCCCTCTCTGTTACATGGCTATTCCAGGGAGCCATAATGCCATAACCTACTGCCTGGATAAGAATGACCGCTCTCCAGTGGACCCTACTCAACCAGATATGTTGCAAAAGCTGGACAAGTACATGAAACCCATCATAAGGCCATTTGTATACAAATGGGCAATAGCACAGCTTTGAATGGAAGATGCTCTTGAAGTACTTGTGGCAGTTTTTGACAGTGACAGGCTGATATGCGAGAGGCTTCATCTCACCGACCTTCACCATCACTTGTATGCTCTGCACTTGAACAAATACATAAATAAAAATTATTAAAGTTTAAGATGCTTTCAAACACCACATTTTTTGATTCAAACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563728 lncRNA downstream 92464 7946374 ~ 7946634 (-) True G491427
TU563712 lncRNA downstream 94952 7943885 ~ 7944146 (-) True G491417
TU563710 lncRNA downstream 97263 7941541 ~ 7941835 (-) True G491415
TU563705 lncRNA downstream 106083 7932794 ~ 7933015 (-) True G491410
TU563697 lncRNA downstream 120899 7917965 ~ 7918199 (-) True G491402
TU563751 lncRNA upstream 73105 8117561 ~ 8119786 (-) True G491448
TU563783 lncRNA upstream 84446 8128902 ~ 8130505 (-) True G491475
TU563778 lncRNA upstream 140840 8185296 ~ 8185607 (-) True G491471
TU563882 lncRNA upstream 388155 8432611 ~ 8435645 (-) True G491565
TU564015 lncRNA upstream 625157 8669613 ~ 8669929 (-) True G491687
CI01000340_08029268_08031877.mRNA mRNA downstream 7094 8029082 ~ 8032004 (-) True CI01000340_08029268_08031877
CI01000340_08020667_08025048.mRNA mRNA downstream 14050 8020455 ~ 8025048 (-) True CI01000340_08020667_08025048
CI01000340_08007878_08016645.mRNA mRNA downstream 21816 8007697 ~ 8017282 (-) True CI01000340_08007878_08016645
CI01000340_07994499_07999442.mRNA mRNA downstream 39447 7994499 ~ 7999651 (-) True CI01000340_07994499_07999442
CI01000340_07778322_07787234.mRNA mRNA downstream 251635 7777743 ~ 7787463 (-) False CI01000340_07778322_07787234
CI01000340_08050696_08058355.mRNA mRNA upstream 5818 8050274 ~ 8058355 (-) True CI01000340_08050696_08058355
CI01000340_08067248_08072622.mRNA mRNA upstream 21568 8066024 ~ 8072914 (-) True CI01000340_08067248_08072622
CI01000340_08125568_08126818.mRNA mRNA upstream 80636 8125092 ~ 8126818 (-) True CI01000340_08125568_08126818
CI01000340_08171358_08172020.mRNA mRNA upstream 126757 8171213 ~ 8172244 (-) True CI01000340_08171358_08172020
CI01000340_08187529_08192962.mRNA mRNA upstream 142707 8187163 ~ 8193114 (-) True CI01000340_08187529_08192962
TU561564 other downstream 1711726 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 1818456 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 2713954 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 3380037 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 3442837 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 754745 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 1977436 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 2312728 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 3629290 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 4022721 12067177 ~ 12106251 (-) False G493266

Expression Profile