RNA id: TCONS_00020439


Basic Information

Item Value
RNA id TCONS_00020439
length 2004
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_010395
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4540981 ~ 4547193 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGTGAAAAGCGTGTAATGGCGGCCTGGCTCCTACACTAGTGTGTACACATGGGAAATACAGCCGATTTGCTGCATTTATCTGCAGGATTTCAGgagttttaaattattattcatcCGACCGTCGATTGAAGTCTTTTCTCAGGATTATTATTCACAATAATAAGcatGTCCGTGTTTGGAGGATTGTGGAGGAGCGCTGTAAACTTGTGTCAATCTTCGAGACTCTTCAGCACAGGCTCCTGTGCTCGAATACGAATGCACGCCATTCCCAAACTCAAAGAAGTGGACCGCTGGACGGAGAAGAGGAGCATGTTTGGGGTTTACGATAACATCGGTATTCTGGGCGACTTTAAAGCTCACCCTAAAGACATGATCCGGGGTCCGGTGTGGGTGCGCGGCTTCAGAGGAAACGAGCTTCAGCGGCTGTTGAGGAAGAGGAATATGGTTGGAGACCGCATGATGACGGAGGACCGACACAACCTGCAGAAGAGGATCAGTCACCTGTACCGCCGCTTCAACAGACACGGCAAACACAGATAAAGAgagatacatacacacacacacacacacacacacacacgttcatatGAAACAGCAGGGGGCCTGTATTACAAAAGATTGAGCTTGAGTTCTGTACGCTGAACACCACCACACCTGTActgatacacactcattcatgtgTTGACAAATGTTCATTAAACTGTAGAAAATGGTGTGTATTACAAAATATTGAGCTTGAGTTCTgtatattaaattgtttattaaaataattaaattattagtcATAAAATCCACCACAAACACAGATATATAGTCACTACCTATCAGTGTTTGTGGTGTGTTTTATCACTAATAtcgaacacacacactcatgttgtagatctggggtccgttcttcgtacgtggattactcagttagctggatttgaatattgacgatttgacatgatccaggattgtttcgttcttcaaaactgatctgagagttgttgtcatagcaacagttctgctagctcaaatcTGGtaggaagcaggttcaattcatacaaactggattagatcggctcagttcaagcaaagataatactgaaagtatgttttggattctgatattttcttacagtagtagttatatacacttgggaaaatacacattttttaaaactatataaagttatagtcattaataaaataaataaagttatatatattaataaaacttatggaATCTGCACccctgaaatgaaagtacaaagactgccacctggtggtgcaaagagaaaacttattgatatgaactttttagatcgcttcaGTACAGTTTGTGTATGGttatagaaatgcacaatatgtgactttttaaaagcaataatacttTTATGCAGTCATGTTTTGACagatatgacggtgatttgatgcttcaaaaAAATTGCAGATATCTAACTGcgtttgtaaacatccagttattctttacaccaattaaaaaacggctactataatactactatgggtactataataaggaaaatccgctctaactgtagAACTGAATAAACTGCTCTTAACACATGAAAGGGtcaagcatgcagcccacaaggtgtaaagttattgcgtatcatatttaacaaaccgtttctaattaatttgatgtaattttgctcacatggataattgaatattaatcagatgatgtcattacgctgctgtgccgtcagccaatcgtttcATTGCTGAtcatttcgaggatcgatagatctgtccttcacaacacacgcagcgatctcagatcagttcattcagacattttaatccgattcacgaacttgtttgaagaaccaaattagccagagatcagttatcaaggttaaaagatccaggatctgccaaatcatcttagatcatttaagcgaggtacgaagaaagGACCCCTGCTCACTAAACAGCACTGTCAGGAGGCCTGTATTACAAAACATTGAGCTCGTGTTTTGCATGCtgaattaaa

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050320-40 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL51 (mitochondrial ribosomal protein L51).

Ensembl:

ensembl_id ENSDART00000060594

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022080 lncRNA downstream 273245 4235317 ~ 4267736 (-) True XLOC_010391
TCONS_00020435 lncRNA downstream 298996 4234727 ~ 4241985 (-) False XLOC_010391
TCONS_00020434 lncRNA downstream 302620 4234727 ~ 4238361 (-) False XLOC_010391
TCONS_00022079 lncRNA downstream 361014 4179036 ~ 4179967 (-) True XLOC_010388
TCONS_00022077 lncRNA downstream 361067 4179036 ~ 4179914 (-) False XLOC_010388
TCONS_00022081 lncRNA upstream 7106 4554071 ~ 4558497 (-) True XLOC_010396
TCONS_00020448 lncRNA upstream 138698 4685663 ~ 4695623 (-) True XLOC_010399
TCONS_00020463 lncRNA upstream 598167 5145132 ~ 5146268 (-) False XLOC_010407
TCONS_00020466 lncRNA upstream 598897 5145862 ~ 5153973 (-) True XLOC_010407
TCONS_00022082 lncRNA upstream 622810 5169775 ~ 5172164 (-) False XLOC_010408
TCONS_00020437 mRNA downstream 9324 4513597 ~ 4531657 (-) True XLOC_010393
TCONS_00020436 mRNA downstream 223102 4287542 ~ 4317879 (-) True XLOC_010392
TCONS_00020432 mRNA downstream 337959 4196932 ~ 4203022 (-) True XLOC_010389
TCONS_00020430 mRNA downstream 509595 4010967 ~ 4031386 (-) False XLOC_010387
TCONS_00020431 mRNA downstream 514716 4011282 ~ 4026265 (-) True XLOC_010387
TCONS_00020441 mRNA upstream 23452 4570417 ~ 4610255 (-) False XLOC_010397
TCONS_00020442 mRNA upstream 29113 4576078 ~ 4610278 (-) False XLOC_010397
TCONS_00020443 mRNA upstream 34057 4581022 ~ 4610256 (-) False XLOC_010397
TCONS_00020444 mRNA upstream 36202 4583167 ~ 4610255 (-) True XLOC_010397
TCONS_00020446 mRNA upstream 68696 4615661 ~ 4640539 (-) False XLOC_010398
TCONS_00020438 other downstream 13334 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020433 other downstream 329046 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020424 other downstream 1805182 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020422 other downstream 1899487 2638359 ~ 2641494 (-) False XLOC_010377
TCONS_00020445 other upstream 68696 4615661 ~ 4619765 (-) False XLOC_010398
TCONS_00020450 other upstream 165699 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020457 other upstream 514534 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020459 other upstream 560333 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020472 other upstream 1274332 5821297 ~ 5857981 (-) True XLOC_010415

Expression Profile

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