RNA id: CI01000340_08928445_08929680.mRNA



Basic Information


Item Value
RNA id CI01000340_08928445_08929680.mRNA
length 2092
RNA type mRNA
GC content 0.40
exon number 1
gene id CI01000340_08928445_08929680
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8927589 ~ 8929680 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCTAAATTGGGTTCAAAACTCAAATTGTTACTTCTCATCCACCTCTTACTGTCTGAAGTAGTATTTGGCAGAGCTCCACTCCCTCAAAGCAACCTGAGGCCCTCAGTCACTTCAAAAAAGTCTCAAACAGAGAAAGTAGAATCACAAGTGGTTGAAGATGGTCTTCTCGCCGCCAATCAGTTGGTCTTAAACCTCTCAGCCTCTCTACAAGGTCAGCTGGATCTCCAAAGCAATGCAAGCTGTGTAGAGCTCGCTAATGGAGGCTGGAGAGGAAATGGTTTCTCTCAGGAGCTATTGGGGTTGGCAATGGTGCCTGTGCTGGTGTCAGCAGGATGTTTGTCTGAAGCCCAGGCTTTGGTAATGCAACTCTACGCAGTGTTAGGCCAAAACGATACATGTGAATTTTTGCAGGACATACTAGTGCTGATAAAAAGAGGCAAAGAGAGGGAATCAGAATACTTTAATCATCACACCTTTACCGGTGATTTCCAATCCCCTTCATCTCCTCTTATGCTCAACTCTGAGTCACAGCGCCACCTGCAGGCTCTTATATTTAACATCCGTCAGTTAGCTGAGGCGAGTGAGAGAGTTGATGGTTATAAGGGTAAAGTTGGACCTAAGGGGCAATGCAAGGGATGGGTGAGGGTGAAAGGCACCCGGTTACTGGGACAGATCGCAGAACAGAGCAGACCATTGCGTATTGGGGAAGCTCAGCAGGCTTGTCAAAGCTTGGGAATCCAATGTGCAGGTGTGACCCAAGATGGTAATTCTGGATATTATTGTGTTATCTTGAGGCGTGGAAGCAGAGTAGTGCCTTCATCTAACTCTGAGAGCTGGATTCAGAATTGCAAGGTGGGCTCTGTACGTTGGCGCAGAAACGGGGTCCCTCAGCATCACTGTGTCAATGAAAAAGAGGAGCGAGTGTATACGGTTGTGGAGTGGATTCCTGCAGTTTCCACGCTGTATAATCTGGGAACAGCCGTTTACTATGCTTCGCTTAACTGCTATGATACTGCAAAAGAGAGAGCCATCTTCAGCACTGTGGATCTGGGCACAGATGCCCTCATGGCTGTAACGGGTGGAACCGCAGGGGTAGCTGGTTATGCACTGGGGGCTGGTTTAAAAACAGGCGTGAAAGCAGGGATCAAATATCTGCTGAACAACATGAAAGACGATTCTAACCTGCTAATGAACCAGAACAGCTTGGAGGATGGAATTATCACTGTCCAATAAGAACCAATGAGAAGATTCAAGAACACAAAGCACTGCTCTGGGGACTCAAGGATTTTTCCACCAGCAGTAAATGATGTTTAAGAAGCTCTGTTTTGTATGTATGTTCAGTCATATAGTTTGTTACAGTGACAGTTCACAATATCAGTCCCATAAATAATATTAAAAGTTAAATCTCTACTGAAACAGTATTTAAATGCTGTTTTAATTGGTAGTCATTTTAATTGGGTTTTCATATGTCCTGTCACTTTCTATTTTGATTGTAATATTGTTAATATCCAAAAGGTATGTAATGACATAAGCATGGAAGAAACGTCATTTTTGGTGCGTAAAAAAATAACAATAGGAGTTACATGAGCTTATTGTAGCAATGGATTTTTTCTCAATTTAAAACATTACATTCTGTTAGATAAAGTTAATCTGTATGATATTTCAATATTTTATATATTATATAATATGATATGATGTTCACCACATGTATTTTTGCACATGTGAAATTTATGTGCTTTTTCTGTAAGGGATATTATTAATTTTTTTAAAAAGACATCCCTTTGATGCATCATGTTCATTTTCTTGTCTTTGTGTAAATAGTGCCTGAGCTTGACCAGAGCATACTTCTTGAAGTCCGGTATGCCTATTCATAAAAATACTTCTTTAATTTAGTTAGACCTCAAAAGGTTCTGCATAACAGAAATGTTGGACCTACATTTATATCATTTCTCCAGCGTAAGCTGAGACTTTTGACTCAGGTCAAACAGCATGGGTAATATTTAACTGCTATTATAAGTCAGTTATTTAAATCAATAACATTAATGGGAAGAGCAGAACACTAGGCAATAGAATACAAGATAAGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU564056 lncRNA downstream 43326 8883828 ~ 8884263 (-) True G491726
TU564055 lncRNA downstream 44194 8882593 ~ 8883395 (-) True G491725
TU564054 lncRNA downstream 46925 8880393 ~ 8880664 (-) True G491724
TU563986 lncRNA downstream 120902 8803715 ~ 8806687 (-) True G491658
TU564015 lncRNA downstream 257660 8669613 ~ 8669929 (-) True G491687
TU564096 lncRNA upstream 107671 9037351 ~ 9037613 (-) True G491764
TU563988 lncRNA upstream 203483 9133163 ~ 9138105 (-) True G491660
TU564177 lncRNA upstream 531706 9461386 ~ 9461638 (-) True G491831
TU564215 lncRNA upstream 629635 9559315 ~ 9559524 (-) True G491869
TU564230 lncRNA upstream 655181 9584861 ~ 9699676 (-) True G491882
CI01000340_08914198_08926239.mRNA mRNA downstream 1350 8913407 ~ 8926239 (-) True CI01000340_08914198_08926239
CI01000340_08875220_08879004.mRNA mRNA downstream 48536 8875165 ~ 8879053 (-) True CI01000340_08875220_08879004
CI01000340_08864647_08868868.mRNA mRNA downstream 58721 8864338 ~ 8868868 (-) True CI01000340_08864647_08868868
CI01000340_08808101_08822062.mRNA mRNA downstream 105527 8806949 ~ 8822062 (-) True CI01000340_08808101_08822062
CI01000340_08780601_08789689.mRNA mRNA downstream 137795 8780601 ~ 8789794 (-) True CI01000340_08780601_08789689
CI01000340_08943640_08947598.mRNA mRNA upstream 13084 8942764 ~ 8947871 (-) True CI01000340_08943640_08947598
CI01000340_08950990_08963235.mRNA mRNA upstream 19884 8949564 ~ 8963878 (-) True CI01000340_08950990_08963235
CI01000340_08986297_08992859.mRNA mRNA upstream 56092 8985772 ~ 8992859 (-) True CI01000340_08986297_08992859
CI01000340_09015910_09020996.mRNA mRNA upstream 85288 9014968 ~ 9021338 (-) True CI01000340_09015910_09020996
CI01000340_09039154_09043792.mRNA mRNA upstream 109143 9038823 ~ 9045639 (-) True CI01000340_09039154_09043792
TU564040 other downstream 128012 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 2600217 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 2706947 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 3602445 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 4268528 4658632 ~ 4659061 (-) True G488887
TU564232 other upstream 1092212 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 1427504 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 2744066 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 3137497 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 3179313 12108993 ~ 12116900 (-) True G493266

Expression Profile