RNA id: TCONS_00020443


Basic Information

Item Value
RNA id TCONS_00020443
length 1935
RNA type mRNA
GC content 0.48
exon number 13
gene id XLOC_010397
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4570417 ~ 4610278 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGGATCAGGGCAGGTTTTTAATCTGGAAAAAGTCAAAAGAGCACCAAGGAAGAAACAACTATCAAACGTCTCGAGGATACCGCACAAGCTGAACGAGAAAATGACAGCATGTTTAAGGTCATGACATcggtttaaaaacacttttaaagagACTCTATCGGAGTGAAGAGAAGCTAACATCGGAGCGGGAGCGGAGGTTTTCCCTCAGCTGCTGGGAAACTAGTTTCGTTTATGTTTGTTAATCTAAACACCTTTGCCTGTCGGACATGACATCAGCTAATCCGGaTATGTCTGAGGTCCCGTCTCTGGCCATGACCTCCTCTAATGGATCTCATTCCAACGGTGTGCAAAAAGCCAACAAACGGCAAGCCACATCCGACTATGAGGACGATGAAGGAGGCAAATTATTCAGGTGTGACGATGATGGAGGCGGATCAAATGACAAGGAGAGATTTGCCAGGGAGAACCACAGTGAGATCGAGCGCCGGCGGAGGAATAAAATGACCGCCTACATCACAGAGCTGTCGGATATGGTGCCCGCCTGCAGCGCTCTGGCACGAAAACCAGACAAACTCACTATCCTGCGCATGGCCGTATCACACATGAAGTCTCTAAGAGGAACTGGAAACACCAGCACCGATGGCACCTATAAACCATCCTTTCTCACAGACCAGGAGCTGAAGCATCTGATTCTGGAGGCAGCTGATGGTTTTCTCTTTGTCGTGTCGTGCGAGACTGGTCGCGTTGTTTACGTGTCGGATTCTGTAACGCCGGTTTTAAACCAGGCTCAGTCAGACTGGCTGGGATCTTCACTATATGATCAGCTTCATCCAGACGATGTGGAGAAGCTCAGAGAGCAGCTTTCCACCACCGAGAACAATAACAACAGCGGCCGGATGTTGGATATGAAAACGGGCACGGTGAAGAAGGAGGGTGGTCAGGCGACTGTGAGGATGAGTATGGGTGCCAGGCGCTCCTTCATCTGCAGAATGAGgtgtGGAGTGTGTCCAGTAGAGCCCGTGTCTCTTAACAGACTGAACTTCCTGAGGACCAGAAACAGGAACGGATTGGGTTCTGCTAAAGACGGCGAGCAGCAGTATGTGGTTGTCCACTGCACAGGCTACATCAGATCTTGGCCTCCTGCAGGAATGAACCTGTCTGAGGAGGAGGCTGATAATAATCAGGGAAATCGTTTCTGTCTAGTTGCCATCGGAAGGCTACAGGTCACCTGTTGCCCGAGCGACACAAGCATAAACAACATCAGCGTTCCAGTGGAGTTCATCTCCCGCCACAATTCTCAGGGTGTCTACACGTTTGTGGATCACCGCTGTACGGCCACGGTGGGCTTCCAGACTCAGGAGTTGCTGGGGAAGAATATTCTGGATTTCGCACACCCAGAAGACCAGGGTTTACTGCGAGACAGCCTTCAGCAGGTGGTGAAGCTGCGAGGTCAGGTGATGTCGGTGATGTTTCGCTTCCAGTCTAAAAGCCGCGAGTGGGTCTGGATGAGGACGAGCTCCTTCACCTTCCAGAACCCTTTCTCTGAGGAGATCGAGTACATCATCTGCACCAACACCAACGTCAAGTGAgtccaatcacacacacacacacacacgcactgttgtttaacaccacacacacaaacgcattaCATTCATGTGAACAATTagaacggtaacactttatttaaatggggTGTTTATAAGACATCTTTATAATCATGAATGAGGTGTTATGCATGCATATGACAGCTGTAATTAAGGATCTTTTGCtcaatttttgtctttttaaatgcaaagatgatatcGTTTGTTATGACAACATGACAAATACATCACTACCGGTCTTCTTCATCAGGACAACTTGAAATTACCAAGACATCAAGACTTGTCATAAATCTTAAAtaatcataaacatgattgtcatgaaccat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009636 response to toxic substance biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko00540 Lipopolysaccharide biosynthesis
ko04066 HIF-1 signaling pathway
ko05200 Pathways in cancer
ko05207 Chemical carcinogenesis - receptor activation
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05211 Renal cell carcinoma
ko04934 Cushing syndrome
ko01503 Cationic antimicrobial peptide (CAMP) resistance
ko01005 Lipopolysaccharide biosynthesis proteins
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-060126-7 Enables sequence-specific DNA binding activity. Acts upstream of or within positive regulation of transcription, DNA-templated; response to toxic substance; and response to xenobiotic stimulus. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human ARNT (aryl hydrocarbon receptor nuclear translocator).

Ensembl:

ensembl_id ENSDART00000127554

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022081 lncRNA downstream 22525 4554071 ~ 4558497 (-) True XLOC_010396
TCONS_00022080 lncRNA downstream 313286 4235317 ~ 4267736 (-) True XLOC_010391
TCONS_00020435 lncRNA downstream 339037 4234727 ~ 4241985 (-) False XLOC_010391
TCONS_00020434 lncRNA downstream 342661 4234727 ~ 4238361 (-) False XLOC_010391
TCONS_00022079 lncRNA downstream 401055 4179036 ~ 4179967 (-) True XLOC_010388
TCONS_00020448 lncRNA upstream 75407 4685663 ~ 4695623 (-) True XLOC_010399
TCONS_00020463 lncRNA upstream 534876 5145132 ~ 5146268 (-) False XLOC_010407
TCONS_00020466 lncRNA upstream 535606 5145862 ~ 5153973 (-) True XLOC_010407
TCONS_00022082 lncRNA upstream 559519 5169775 ~ 5172164 (-) False XLOC_010408
TCONS_00022083 lncRNA upstream 559519 5169775 ~ 5173443 (-) True XLOC_010408
TCONS_00020440 mRNA downstream 33829 4542443 ~ 4547193 (-) True XLOC_010395
TCONS_00020439 mRNA downstream 34057 4540981 ~ 4546965 (-) False XLOC_010395
TCONS_00020437 mRNA downstream 49365 4513597 ~ 4531657 (-) True XLOC_010393
TCONS_00020436 mRNA downstream 263143 4287542 ~ 4317879 (-) True XLOC_010392
TCONS_00020432 mRNA downstream 378000 4196932 ~ 4203022 (-) True XLOC_010389
TCONS_00020446 mRNA upstream 5405 4615661 ~ 4640539 (-) False XLOC_010398
TCONS_00020447 mRNA upstream 8893 4619149 ~ 4640578 (-) True XLOC_010398
TCONS_00020449 mRNA upstream 100721 4710977 ~ 4721629 (-) False XLOC_010400
TCONS_00020451 mRNA upstream 136332 4746588 ~ 4769967 (-) False XLOC_010401
TCONS_00020452 mRNA upstream 136333 4746589 ~ 4770233 (-) False XLOC_010401
TCONS_00020438 other downstream 53375 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020433 other downstream 369087 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020424 other downstream 1845223 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020422 other downstream 1939528 2638359 ~ 2641494 (-) False XLOC_010377
TCONS_00020445 other upstream 5405 4615661 ~ 4619765 (-) False XLOC_010398
TCONS_00020450 other upstream 102408 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020457 other upstream 451243 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020459 other upstream 497042 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020472 other upstream 1211041 5821297 ~ 5857981 (-) True XLOC_010415

Expression Profile

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