RNA id: CI01000340_09611318_09614740.mRNA



Basic Information


Item Value
RNA id CI01000340_09611318_09614740.mRNA
length 1026
RNA type mRNA
GC content 0.42
exon number 6
gene id CI01000340_09611318_09614740
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9611318 ~ 9614740 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCGTATATAAATATGTGGATATTTTTAAACATCCTGTCATCTCTGCACTACCTCATAACAGCCTGTACTCCATCAGACAGTGGTGTGACAAATATAACAGCTTTCTCAGGAGAGTCTGTGCTGCTGCCCTGCACTTGTACCAACACACAGGACAAGCCCAAGAGCTTCTCCTGGGAAACTAAAAGCAGAAGGGCTTCTAAAGATGGCATTTACATTGATATATTCAGTGTGTTTGACCTGTACAGAGACAGAATTACACTGTTTAATCAGACTTCACCAGGAAACGTCTCTCTGCTTCTGTCAGATCTGACTGAGGATGACCAGGGATCATACGTCTGTTTGTTAGAAAAAACCTCCAGATTCATCGACGTCTCCATTAAAAAGAGAATTGAAAGTACAGCATTACCTAAGACGAGTCTCGGTGTGTTGATCTCTGTGCCGTTTCTAGCGATAGGAGGAGCAGCAGCTGTCATTTACTGCATTCACAGAGCTCACAAAAAAGCAAGGATGGAGACTGGCGAGATAGATATGGAAAATAATTTGGCTTGTCTCTTAAAACAAGCCCTGCCCTCGCAGGCGTGGCAGAATGAAGACTTAATAAATCTGCAGAGCAATATAGCTTCAGCTTTTCACAGCACAAACCGCATCACAATTTGCTTAAAACTCAGAAAATGGCAGAGGCAGCTAAACATTCATGACGGACACATTAGCATAGAAGATCTGAGAAATGCACTTCAGGAAGATACTAATGTAGAACAAATATTGCGTGACTTCAAAAAATTGGGAATAACCTATGAACTAAAACTACTTGATTACCTGACTAGAAGCATCCTAAACTATCCAACCCCCACTGAATTTCACATCTCAGAGGTGACTCATGTCACTGACATAGATGGTCTTCACAAAATCTGGGAGTCAGAGGGATTCAAGGCTCATGGTAATGATGATGAGAAGTTCTCATGGTGGAACCTGAAGATTGATAAAGAGAGTATACAAGCAGCTGAGGAGCGTTATCTGGAGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU563264 lncRNA upstream 35036 9576072 ~ 9576282 (+) True G491023
TU563263 lncRNA upstream 36350 9574731 ~ 9574968 (+) True G491022
TU563262 lncRNA upstream 36836 9574250 ~ 9574482 (+) True G491021
TU563260 lncRNA upstream 38048 9570591 ~ 9573270 (+) True G491020
TU563139 lncRNA upstream 41481 9568019 ~ 9569837 (+) True G490933
TU563274 lncRNA downstream 5500 9620240 ~ 9623041 (+) True G491031
TU563276 lncRNA downstream 10118 9624858 ~ 9625218 (+) True G491032
TU563300 lncRNA downstream 117618 9732358 ~ 9733035 (+) True G491052
TU563120 lncRNA downstream 126928 9741668 ~ 9742721 (+) True G490914
TU563060 lncRNA downstream 235795 9850535 ~ 9851679 (+) False G490857
CI01000340_09589824_09608037.mRNA mRNA upstream 2713 9589824 ~ 9608605 (+) True CI01000340_09589824_09608037
CI01000340_09364385_09394079.mRNA mRNA upstream 216793 9364385 ~ 9394525 (+) True CI01000340_09364385_09394079
CI01000340_09339973_09344291.mRNA mRNA upstream 266925 9339911 ~ 9344393 (+) True CI01000340_09339973_09344291
CI01000340_09305181_09322207.mRNA mRNA upstream 288928 9305181 ~ 9322390 (+) True CI01000340_09305181_09322207
CI01000340_09293326_09302243.mRNA mRNA upstream 308903 9293184 ~ 9302415 (+) True CI01000340_09293326_09302243
CI01000340_09630528_09631067.mRNA mRNA downstream 15788 9630528 ~ 9631363 (+) True CI01000340_09630528_09631067
CI01000340_09645797_09647452.mRNA mRNA downstream 31057 9645797 ~ 9647551 (+) True CI01000340_09645797_09647452
CI01000340_09649643_09655912.mRNA mRNA downstream 34903 9649643 ~ 9655912 (+) True CI01000340_09649643_09655912
CI01000340_09656584_09660334.mRNA mRNA downstream 41844 9656584 ~ 9660560 (+) True CI01000340_09656584_09660334
CI01000340_09674645_09681913.mRNA mRNA downstream 59905 9674645 ~ 9682677 (+) True CI01000340_09674645_09681913
TU563038 other upstream 373759 9234973 ~ 9237559 (+) True G490839
TU563018 other upstream 479921 9125184 ~ 9131397 (+) True G490826
TU562819 other upstream 568217 9038812 ~ 9043101 (+) True G490645
TU561697 other upstream 2910530 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 4946133 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU563102 other downstream 216733 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 1036943 10651683 ~ 10652694 (+) True G492194
TU564649 other downstream 1168662 10783402 ~ 10787792 (+) False CI01000340_10781781_10785861
TU564645 other downstream 1168916 10783656 ~ 10787792 (+) True CI01000340_10781781_10785861
TU565316 other downstream 1994366 11609106 ~ 11696961 (+) True G492847

Expression Profile