RNA id: CI01000340_09630528_09631067.mRNA



Basic Information


Item Value
RNA id CI01000340_09630528_09631067.mRNA
length 617
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000340_09630528_09631067
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9630528 ~ 9631363 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCCTCTGCACTGCCGTGCCAGCCACATGTTCCTGCTCATATGCGCTCTTTCCTTATGTCTCGAGTCCGTGAGAGGCGGCACCAGCTTTCTCAGTCCTGCTCAGAAACCACAGGGTCGAAGGCCCCCACGGGTGGGCAGAAGAGATGCTGCTGATTCAGAGATCCCAGTGATTAAAGAGGATGATCAGTTCATGATGAGTGCTCCGTTCGAACTGTCCGTGTCTCTGAGTGAAGCAGAGTATGAGAAATACGGTCCTGTGCTGCAGAAGGTTCTTGTGAATCTTCTTAGTGATTCTCCATTTGGTGAGCTAAACTCTTGATCCAAACAAGTAACTATGAAAATTCACTATGAAAAATGGCGTTTAATTTCCCAGAAAAAGTCCGTATTTTTAAAGAACCCTAAAAACTAAAAGTGCTTCCTGTCAGAAAATTCTTCAAGTCACCGTTTGCTGTATTTGAATAATTTTAGTGTTCTGCAAACTAACTAATATACTAAATGTATTTTCTCGTTTTTTTTCAGAATTCTGACAAGAGCTACCAGTCCTACGAGAATCAATTCCTTATAAATCAAAAATTATTCAAAATTTAAATCATTTTCTAACAGCAATTTGACAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU563276 lncRNA upstream 5310 9624858 ~ 9625218 (+) True G491032
TU563274 lncRNA upstream 7487 9620240 ~ 9623041 (+) True G491031
TU563264 lncRNA upstream 54246 9576072 ~ 9576282 (+) True G491023
TU563263 lncRNA upstream 55560 9574731 ~ 9574968 (+) True G491022
TU563262 lncRNA upstream 56046 9574250 ~ 9574482 (+) True G491021
TU563300 lncRNA downstream 100995 9732358 ~ 9733035 (+) True G491052
TU563120 lncRNA downstream 110305 9741668 ~ 9742721 (+) True G490914
TU563060 lncRNA downstream 219172 9850535 ~ 9851679 (+) False G490857
TU563059 lncRNA downstream 219237 9850600 ~ 9851679 (+) True G490857
TU563316 lncRNA downstream 230628 9861991 ~ 9862216 (+) True G491067
CI01000340_09611318_09614740.mRNA mRNA upstream 15788 9611318 ~ 9614740 (+) True CI01000340_09611318_09614740
CI01000340_09589824_09608037.mRNA mRNA upstream 21923 9589824 ~ 9608605 (+) True CI01000340_09589824_09608037
CI01000340_09364385_09394079.mRNA mRNA upstream 236003 9364385 ~ 9394525 (+) True CI01000340_09364385_09394079
CI01000340_09339973_09344291.mRNA mRNA upstream 286135 9339911 ~ 9344393 (+) True CI01000340_09339973_09344291
CI01000340_09305181_09322207.mRNA mRNA upstream 308138 9305181 ~ 9322390 (+) True CI01000340_09305181_09322207
CI01000340_09645797_09647452.mRNA mRNA downstream 14434 9645797 ~ 9647551 (+) True CI01000340_09645797_09647452
CI01000340_09649643_09655912.mRNA mRNA downstream 18280 9649643 ~ 9655912 (+) True CI01000340_09649643_09655912
CI01000340_09656584_09660334.mRNA mRNA downstream 25221 9656584 ~ 9660560 (+) True CI01000340_09656584_09660334
CI01000340_09674645_09681913.mRNA mRNA downstream 43282 9674645 ~ 9682677 (+) True CI01000340_09674645_09681913
CI01000340_09684020_09686723.mRNA mRNA downstream 52136 9683499 ~ 9686753 (+) True CI01000340_09684020_09686723
TU563038 other upstream 392969 9234973 ~ 9237559 (+) True G490839
TU563018 other upstream 499131 9125184 ~ 9131397 (+) True G490826
TU562819 other upstream 587427 9038812 ~ 9043101 (+) True G490645
TU561697 other upstream 2929740 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 4965343 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU563102 other downstream 200110 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 1020320 10651683 ~ 10652694 (+) True G492194
TU564649 other downstream 1152039 10783402 ~ 10787792 (+) False CI01000340_10781781_10785861
TU564645 other downstream 1152293 10783656 ~ 10787792 (+) True CI01000340_10781781_10785861
TU565316 other downstream 1977743 11609106 ~ 11696961 (+) True G492847

Expression Profile