RNA id: TCONS_00020446


Basic Information

Item Value
RNA id TCONS_00020446
length 1808
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_010398
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4615661 ~ 4640578 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTGCTCTACGGGATTTCTCCGTTTGTGCTCTCCGTCAATCATGTTTTTGCGCTCATCTTTCTGGCGTGTTTGCTGACAGTGGTGAAGTTACTGATTGTGAGGAGAAAGGGGGTGAAAACTATGGAGCGTTTCCCTGGACCTCCTGCACACTGGCTCTTTGGACACGTTAAGGAGTTCCGCCAGGATGGACATGATTTAGAGAAGATCGTCAAGTGGATGGAACTGTATCAGTTTGCCTTCCCTCTATGGTTTGGCCCGTCGTTGGCTGTTTTGAACATCCACCATCCGTCATATGTGAAGACCATTCTCACAACCACAGAACCCAAAGATGACTACGCATACAAGTTTTTCATCCCATGGTTAGGCGATGGCTTACTGGTGTCCACTGGACAGAAATGGTTCCGGCATAGACGACTGCTCACTCCTGGTTTCCATTATGACGTTTTGAAGCCTTACGTGAAACTTATTTCTGATTCAACTAAAGTCATGCTTGATAAATGGGAAGTTCACTCCAGATCAGAAGAGTCCTTTGAGCTGTTTAAGCATGTAAGTCTCATGACGCTGGACAGCATCATGAAATGTGCATTCAGCTGTAACAGCAACTGTCAGACAGACAGTGGAACCAACCCGTATATCCAGGCAGTGTTTGACCTCTGCCACCTGGTGAACCTCAGGTTCAGAGTGTTTCCGTACCACAGCAAGGCCATATTTCATCTCAGTCCACATGGATACCGGTTCAGGAAGGCAGCCAGCATTGCACACAATCACACAGCGGAAGTTATCAGAAAGAGGAAAGAAGTCttgaagatggaggaggagcAGGGCATTGTTAAAAACAGACGATATTTAGACTTTCTGGATATTCTTCTGTCTGCTCGAGACGAGCATCAGCAGGGTTTGTCAGACGAGGACATCAGAGCTGAAGTGGACACGTTCATGTTTGAGGGCCACGACACCACGGCTAGTGGAATATCCTGGATCTTCTATAATCTGGCTTGTAATCCCGAGCACCAGGAGAAATGCAGGCAGGAGATCCAGCAAGCTCTGGATGGAAAAGCCACGCTGGAGTGGGAAGACCTGAATAAAATTCCATACACCACAATGTGCATTAAAGAATCACTGCGGCTTCATCCTCCTGTGCCAGGAATATCACGGAAGCTGACCAAACCCTTGACTTTCTTTGATGGACGAACTGTACCTGAAGGTTGCACCATTGGAGTCAGCATTTATGGGATCCACATGAATTCCACAGTGTGGGAGAATCCATATAAATTTGATCCCCTGAGGTTTTTGCCTGAGAACGTCGCTAACAGGTCTCCTCATGCCTTTGTGCCCTTCTCTGCTGGACCCAGAAACTGCATTGGGCAGAACTTCGCCATGAATGAGATGAAAGTTGCAGTGGCGCTGACGCTGAAGAGATATTACCTCATTAAAGACCCCGATCACACCCCGAAGATGATCCCTCAAGTCGTGCTCCGATCTCTCAATGGGATTCACATCAAAATCAAACCTGTTGAAAACGATTGATGAAATGCTAGTGAGTACACTGAGCCTGCTGGACATTTCTAGGAGGCGTCTTTGACCACCATTAAAATGCTGCGTAGCATTATTCAATAAGCACATGGAAACGGAAAGGTTAGACAATAACACATAGTTTTGTAACCAGTGCTAaactacatttttaatgtttttttttgtttgttttttttctcttgtgaTGAGTGTAAACTATTTTAGTGGTTGTTTTTGGAGATTTTGAGGCTTTGTCTCACCACAATATAATAAAAGATGATGTTGTTTCCTCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031219-3 Predicted to enable several functions, including heme binding activity; iron ion binding activity; and monooxygenase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in myotome; nervous system; otic vesicle; pharyngeal arch 3-7 skeleton; and somite. Human ortholog(s) of this gene implicated in hypertension. Orthologous to several human genes including CYP4B1 (cytochrome P450 family 4 subfamily B member 1).

Ensembl:

ensembl_id ENSDART00000076955

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022081 lncRNA downstream 57164 4554071 ~ 4558497 (-) True XLOC_010396
TCONS_00022080 lncRNA downstream 347925 4235317 ~ 4267736 (-) True XLOC_010391
TCONS_00020435 lncRNA downstream 373676 4234727 ~ 4241985 (-) False XLOC_010391
TCONS_00020434 lncRNA downstream 377300 4234727 ~ 4238361 (-) False XLOC_010391
TCONS_00022079 lncRNA downstream 435694 4179036 ~ 4179967 (-) True XLOC_010388
TCONS_00020448 lncRNA upstream 45124 4685663 ~ 4695623 (-) True XLOC_010399
TCONS_00020463 lncRNA upstream 504593 5145132 ~ 5146268 (-) False XLOC_010407
TCONS_00020466 lncRNA upstream 505323 5145862 ~ 5153973 (-) True XLOC_010407
TCONS_00022082 lncRNA upstream 529236 5169775 ~ 5172164 (-) False XLOC_010408
TCONS_00022083 lncRNA upstream 529236 5169775 ~ 5173443 (-) True XLOC_010408
TCONS_00020442 mRNA downstream 5383 4576078 ~ 4610278 (-) False XLOC_010397
TCONS_00020443 mRNA downstream 5405 4581022 ~ 4610256 (-) False XLOC_010397
TCONS_00020441 mRNA downstream 5406 4570417 ~ 4610255 (-) False XLOC_010397
TCONS_00020444 mRNA downstream 5406 4583167 ~ 4610255 (-) True XLOC_010397
TCONS_00020440 mRNA downstream 68468 4542443 ~ 4547193 (-) True XLOC_010395
TCONS_00020449 mRNA upstream 70438 4710977 ~ 4721629 (-) False XLOC_010400
TCONS_00020451 mRNA upstream 106049 4746588 ~ 4769967 (-) False XLOC_010401
TCONS_00020452 mRNA upstream 106050 4746589 ~ 4770233 (-) False XLOC_010401
TCONS_00020453 mRNA upstream 106249 4746788 ~ 4769877 (-) True XLOC_010401
TCONS_00020454 mRNA upstream 193988 4834527 ~ 4836218 (-) True XLOC_010402
TCONS_00020438 other downstream 88014 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020433 other downstream 403726 4210477 ~ 4211935 (-) True XLOC_010390
TCONS_00020424 other downstream 1879862 2735676 ~ 2735799 (-) True XLOC_010378
TCONS_00020422 other downstream 1974167 2638359 ~ 2641494 (-) False XLOC_010377
TCONS_00020450 other upstream 72125 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020457 other upstream 420960 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020459 other upstream 466759 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020472 other upstream 1180758 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020473 other upstream 1230034 5870573 ~ 5870689 (-) True XLOC_010416

Expression Profile

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