RNA id: CI01000340_09779573_09780250.mRNA


Basic Information

Item Value
RNA id CI01000340_09779573_09780250.mRNA
length 2774
RNA type mRNA
GC content 0.37
exon number 1
gene id CI01000340_09779573_09780250
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9779279 ~ 9782052 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATCCAAGAGACTTATTGTTAAGGTTAGCATTTTGGGGGGCAATTTGAACAAGCTTTAGGTTAATGACATTTAATATTTGATGTGAGTCATGATGAACAGGCATGTGATGCTGATTAAAGTGTAAAACTATATGCATGATGAGTCTTAAACAGGATTCAAAACATGTTTCTTTCATGACTGGTTTTTAAACATTTGCATATGCTTTGTCTCAGCATCATCTTTATCATATACAGCACTGCAGTAATGATGCCCATATAGCAAGCACATTTACATGTTGTTATTTTCTATGTCAGATAGCTTACCGTGTAACCATTTGGGATTATAAAATTCAAAAGATATTTTGCTCTTTTCCTATTCATTCAGATACATTGAATAGTAAGTAACAATCTTAAATTTAAGACTAAATTTATGATTTATGAGTTGCATATAAACTTTCCATCCATTTGGATTACGCCACACAGTTTTAACATAAACTAATAATAAACTTAATATAATGCATATTTTTATAGAAATCTTATCTGTTTCATTAATGTATGACTGACAAATATGCATCACGTTAAAGGGTAAGTTCACACAAAAATGAAAATTATGTTATTAATTACTCACCCTCATGTCGTTCCACACTCGTAAGACCTTCGTTCATTTTCGGAACACAAATTAAGATATTTTTGGCCTGCATCACCAGCAATAACACTCCCTTTTTCAATGCCCATAAAGCTACTAAAATCATATTTAAAACAGTTCATGTGACTACAGTACTTCAACCTTAATATTATAAAGCAACGAGAATACTTTTTGTGCGGCAAAAATAACAAAATAGCGACTTTATTTCACAATATCTAGTGATGGGCGATTTCAAAACACTGCTTTGTGAAGCTTCGAAGCTTAACGAATCATTTGTTTCAAATCAGCGGTTCGGAGTGCGTATCAAACTGTCAAAGTCACGTGAACTACTGAAGTTACTTATGACGTAACGAAGCCTCGTTTATTGAAATCATGGGATTTTGGCGCTCTGAACCACTGATTCGAAACAAAAGATTTGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTGAAATAAAGTCGCTATTTCGTTATTTTTGGCGCACAAAAAGTATTCTCGTCGCTTTATAATAATAAAGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTTTTTAGTAGCTTTATGGGCATTGAAAAAGGGAGTGTTATTGCTGGCGATGCAGGCCTCACTGAGCCATCGGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGAGTGAGTAATTAATGACATAATTTTAATTTTTGGGTGAACTAACCCTTTAAGTTTATTAGTTTGTTTATGTTAAAACTGTGTAATCCAAATGGATGGAAAATGTATGTGGAATTCAAATACATACATTTTAAATTAAGGTAGTGTATTAAAAAAAAAACTTTTAAATGTATTTATATTTAATAAAAGATAACTGTAATCACAGAAGTTTTTCAGAACAATAGCATTAAGAAAGACAATTTTCATCTTTGAGCAGTGCATTAGCCATCCATTTCGAGTTTAATTTCATTATTCACCATGTTTTGCCATAGTTTAACTCATATATGGATTCACAGTTGCACTTTTTAGTTTAATGTAAGACTACAGCATCTGTATCTTGTAAGCAATCATGGTGCCAATGAATAACTTGAAGAATTCATTTTGCATTTCAGATTTTCTTCTGAGCACACAACAGAATGGAGGAACCAGAAGTATCCACAGCAACACGTACCGGTTCAGTACGGCACCAACACGAGACCTCCGCTGATGACCAGGACAATGCCTGGGATGCTGGTCCGGAATGTTCAATCTGCTTTTGCGCATACGACAACACCTTCAAGACACCGAAGCTTCTTGAATGTACCCATACCTTCTGTCTGGAATGTCTGGCTCGCTTTGTAGCTATTTCACCGGAGCAGGCAGGCACCCAGATCACCTGCCCCCTTTGTCGACAGCCAACGTCTGTGCCTGAGCATGGTACTCCAGATCTGGCCACCAGCCAGGAAGTTTTGGGTCAACTTCCAAGCGACCAGCAACAAGTGGAGAAAGTTTTCCTAGACGGAAAGAGGCTGTGCTACTCGAACCCAATGATACCCAACTGCATCTGCATTGACATTGGTGAGCATAAAGCAGAAGAGACGCAGAGGAGAGAGGAGAGAAGAGAGGGTTGTGGACACAGGCTGCTGCGATTCTTGGGTTTTCACGGGAACTGGAAGAGGCTTTTGGTCTTCATCATAGTGCTCCTTGTGGTCTGCTTTGTTATACTGTGGCCCCTCCAGTGCTTTATCATCTCAGGCTCTATGTCAGAATGCTTCCGGGAATCACCAAAGATTCCAACTACTCTCGCCGCTCCCAGACCTACAGTGGGGTCATAAGACACACAGGTGCACACAAGACTTTTTAATTCAAACCCGAAAACACTTTGAATTTCATGAATTGCAAATGGCATTAGCTTCAGTCTAAAAACATGAGTGACGGCCTGATGCAAACACAACCACAACATTTACAGTTTCATATGTCCATAAAACTGTATATTGGTTAAAGTTCTACTTTCTTTTTTTAAACTGAATATTTGTTTGAAATATCATTTTTATATCACTTAGCTTCCTAAATGCCACTGTAAATATTTAAAATTATTTTCTGTGTTTAAAACAGATGAACAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564334 lncRNA downstream 12705 9765435 ~ 9766574 (-) True G491970
TU564303 lncRNA downstream 85908 9691608 ~ 9693371 (-) True G491946
TU564293 lncRNA downstream 154051 9624884 ~ 9625228 (-) True G491938
TU564221 lncRNA downstream 171635 9605977 ~ 9607644 (-) True G491875
TU564287 lncRNA downstream 181178 9597631 ~ 9598101 (-) True G491933
TU564342 lncRNA upstream 72854 9854906 ~ 9855304 (-) True G491978
TU564344 lncRNA upstream 76219 9858271 ~ 9858545 (-) True G491980
TU564347 lncRNA upstream 84997 9867049 ~ 9867353 (-) True G491983
TU564240 lncRNA upstream 113710 9895762 ~ 9896892 (-) True G491890
TU564356 lncRNA upstream 176094 9958146 ~ 9958381 (-) True G491992
CI01000340_09772435_09775402.mRNA mRNA downstream 3877 9772238 ~ 9775402 (-) True CI01000340_09772435_09775402
CI01000340_09744311_09747075.mRNA mRNA downstream 31972 9743572 ~ 9747307 (-) True CI01000340_09744311_09747075
CI01000340_09702982_09703952.mRNA mRNA downstream 74519 9702969 ~ 9704760 (-) True CI01000340_09702982_09703952
CI01000340_09640461_09646025.mRNA mRNA downstream 133254 9639816 ~ 9646025 (-) True CI01000340_09640461_09646025
CI01000340_09637047_09638688.mRNA mRNA downstream 140591 9636694 ~ 9638688 (-) True CI01000340_09637047_09638688
CI01000340_09785598_09788215.mRNA mRNA upstream 3498 9785550 ~ 9788301 (-) True CI01000340_09785598_09788215
CI01000340_09794255_09797190.mRNA mRNA upstream 11885 9793937 ~ 9797689 (-) True CI01000340_09794255_09797190
CI01000340_09811189_09815649.mRNA mRNA upstream 28519 9810571 ~ 9815649 (-) True CI01000340_09811189_09815649
CI01000340_09817874_09828387.mRNA mRNA upstream 35742 9817794 ~ 9828988 (-) True CI01000340_09817874_09828387
CI01000340_09833384_09843244.mRNA mRNA upstream 51251 9833303 ~ 9843625 (-) True CI01000340_09833384_09843244
TU564040 other downstream 979702 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 3451907 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 3558637 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 4454135 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 5120218 4658632 ~ 4659061 (-) True G488887
TU564232 other upstream 239840 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 575132 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 1891694 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 2285125 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 2326941 12108993 ~ 12116900 (-) True G493266

Expression Profile