RNA id: CI01000340_10882106_10884072.mRNA



Basic Information


Item Value
RNA id CI01000340_10882106_10884072.mRNA
length 1549
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000340_10882106_10884072
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10880971 ~ 10884198 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATAAAATCACCCAAAAATAGGTTGTGTGGACCACTTTTATTATGCTTTTTTTGTGTGTTGCATGGAAAAAATATCAACATAAGGCTATGTTCACACTGTCAGTTTTTGGGATTAACAACTGCATTTACTTACAGGTGTGAGTCTCGAAATGTTCGTTCACACAGCAAATTCTCAAATACTGTCTGTATGAACGTGCAACGGGAGTCAAGCCCATTATCCATAGTGACAGTGACCAAAGTAATATCAAAGATGGTGATGTCCATAAAACTGAAAAGTCTTTCAGGACTGTTTTGACATGACAACAGTCCAATTGAGCCGTAAGTTTGTTCATCAAATCTTCATTAACCGACAGCGGCTTTTTTATCTGGGCAGAGAGTGGAGCATTTGAGTTGTGTGTAGAACACAAAAGTGGAGAATAATGTCCGGATCTAGAACCTTCAGATGACACACATAGAAACCACACAAGAAAACTCTCAAAACATGGTAGACACACGTTTGTGCAGCACAGAGCGGTTCTCTCACATGTGACAGAAAACTAGTTGTCCAGTCCGATTGCATTAGGTTGTGGGTTTTCCAATGCGGTTGTGCGTCCTGAAAATCTCCGGGTGTGAGTTTGGTTATTTAATGAGGTTGTCACTCCTGTAAATAACTGATCTGAGTGTGAATGTAACCTTATTAATGACACAAATACAGGACTGACAACCGCATTCCGCCGCTGTGTGAACATGGATTCATAATGACATGAGGGTGAATAAATAATGATTTTGTTTTCATTTTTGGGTCAACTGTCCTTTTAAGGTCAGATTGTTCCTCTTAGGAGCCACAGTGGGCACGAAGAGGAGAGGAAAAGGGTGGAAAAATTTCCCCCCACAAAAAAGTGTGTGTGCTTATTACAAAGCATGCGTGTCTGTGTGCATACACCATTTTCTTTCCATCAGCAAAGACAATGCCTTTCCCTTGTGTGTCTACTGTTTGGTTGCCATGGCAGCATTCCTTTTGTTACCTGTCACAGCGTTATGGCACATTTCACCTGTTATTTGATAGCTATGTTTTTGTGCATCAAGTTCTTAGAAATTTCAAAATTCACCCTTTGATCTAACGGCATAGAGAAGGTCTTATTTTTAAGTATTGCCATGGGAGTGACAACAGATACAACCGTTTCATTCTGGGCTGACAACAACTGCCACCATTTATTACCATCTGTCAGTCAGGCACGGACTTTAATACCACAGCAGTACTTATACCAGACAATGACCTGTACTGACACACCAAAGCATCATGACAGAGGAAACAGTAAGTTTTTCCTCCAGATGTTCCTCGTCACTTCAGAGGAATGGCAAATGTGGGCTGGAGAGTTAGACGGTGGGAAAGATGTGCTTGTGGTTCTGAGCCAAATTCAGCTGGAGTCTCGAATGTCTTAACATGGTGTGTAGATTGTATACTTGTGTTTGTGAGTGTCTGAGATGAGACTGGAATTGTTGGTGTTGTCTGTGGTGGCAGCAAGCTGTCTGCTCATGTTGTTGTGTGATGAAGTGATCTCATGCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU564808 lncRNA upstream 16916 10863820 ~ 10864055 (+) True G492402
TU564805 lncRNA upstream 20269 10860439 ~ 10860702 (+) True G492399
TU564635 lncRNA upstream 130098 10750647 ~ 10750873 (+) True G492249
TU564570 lncRNA upstream 188028 10689846 ~ 10692943 (+) True G492190
TU564613 lncRNA upstream 192109 10688584 ~ 10688862 (+) True G492230
TU564825 lncRNA downstream 31566 10915764 ~ 10916710 (+) False CI01000340_10915894_10921086
TU564831 lncRNA downstream 33491 10917689 ~ 10918297 (+) True CI01000340_10915894_10921086
TU564824 lncRNA downstream 42911 10927109 ~ 10927501 (+) True G492416
TU564828 lncRNA downstream 46368 10930566 ~ 10931507 (+) True G492420
TU564812 lncRNA downstream 50652 10934850 ~ 10936632 (+) True G492405
CI01000340_10869243_10869956.mRNA mRNA upstream 10573 10868237 ~ 10870398 (+) True CI01000340_10869243_10869956
CI01000340_10790372_10803993.mRNA mRNA upstream 76572 10790372 ~ 10804399 (+) True CI01000340_10790372_10803993
CI01000340_10781781_10785861.mRNA mRNA upstream 94620 10781468 ~ 10786351 (+) False CI01000340_10781781_10785861
CI01000340_10731548_10747121.mRNA mRNA upstream 133323 10730673 ~ 10747648 (+) True CI01000340_10731548_10747121
CI01000340_10644426_10645811.mRNA mRNA upstream 235121 10644426 ~ 10645850 (+) True CI01000340_10644426_10645811
CI01000340_10896398_10912573.mRNA mRNA downstream 12036 10896234 ~ 10912704 (+) True CI01000340_10896398_10912573
CI01000340_10915894_10921086.mRNA mRNA downstream 31696 10915894 ~ 10921200 (+) False CI01000340_10915894_10921086
CI01000340_10975991_10979709.mRNA mRNA downstream 91113 10975311 ~ 10980045 (+) True CI01000340_10975991_10979709
CI01000340_11013452_11016952.mRNA mRNA downstream 128739 11012937 ~ 11017219 (+) True CI01000340_11013452_11016952
CI01000340_11096711_11098581.mRNA mRNA downstream 212513 11096711 ~ 11099309 (+) True CI01000340_11096711_11098581
TU564649 other upstream 93179 10783402 ~ 10787792 (+) False CI01000340_10781781_10785861
TU564645 other upstream 93179 10783656 ~ 10787792 (+) True CI01000340_10781781_10785861
TU564577 other upstream 228277 10651683 ~ 10652694 (+) True G492194
TU563102 other upstream 1035919 9831473 ~ 9845052 (+) True G490896
TU563038 other upstream 1643412 9234973 ~ 9237559 (+) True G490839
TU565316 other downstream 724908 11609106 ~ 11696961 (+) True G492847
TU566211 other downstream 2171194 13055392 ~ 13069652 (+) True G493617
TU566345 other downstream 2631029 13515227 ~ 13517111 (+) True G493740
TU566400 other downstream 2937996 13822194 ~ 13923213 (+) True G493782
TU567022 other downstream 3213433 14097631 ~ 14097890 (+) True G494346

Expression Profile