RNA id: CI01000340_10951922_10954429.mRNA


Basic Information

Item Value
RNA id CI01000340_10951922_10954429.mRNA
length 677
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000340_10951922_10954429
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10951834 ~ 10954436 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATACTATGGACACTACTAAGCTCTGGTTTACGCTGCTCTGTGTTTGTGGCAGCTGGATTTTGAGTCTGGCTGTAGACTGTGACTGGACCACCGAGTATGAATTTGAAAATAGATGTTGTAAAGCCTGCCCTTCAGGTGAGTATCCCAAAGTGCCATGTCAAAGGAACAACAATGACAGTGTGTGTGAGAAATGTTCACCAAACCTTGCTTCGGCTAAGGACAGATGTTTCTGCAAAAATAATCATTTATGCATGGATGATAAATGTGACAAATGTGAGCCCAGAACAATATGTAAACCTGGACATCAACTGGATAGATTTGTTCCAAACATATCATCAGTTACAGTTCACCCAGGCAAATACGAAAAGGAGATCCATCCTACTCATTCCTTCATGGTGGCCTGTTTAACAGTCACAGTGTTGACCTGCCTGGTTTTTATCATGTATACTGCTTTTCAAATTTTCAAATACAAGATGCTCATAAAATATAGTTGCAAACTATCCAAGGAAGAAAAAGGTGAGGAATGTGACTTCAAGACAGAGGTATCAGAAGAATATTGCAAGTGTGATGTCTATGGCATTCCTTGAATATTCTCTGCATGTGATGTGAAGAACATCCAATGAAACAGACTTTCTTCAACTGACTGGATTGCATTTGCAATATAACATCTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564960 lncRNA downstream 35167 10915322 ~ 10916667 (-) True G492551
TU564806 lncRNA downstream 91134 10860431 ~ 10860700 (-) True G492400
TU564798 lncRNA downstream 110164 10841453 ~ 10841670 (-) True G492392
TU564791 lncRNA downstream 125414 10826199 ~ 10826420 (-) True G492385
TU564759 lncRNA downstream 154565 10793259 ~ 10797269 (-) True G492356
TU565002 lncRNA upstream 5377 10959813 ~ 10960064 (-) True G492586
TU565016 lncRNA upstream 70496 11024932 ~ 11025149 (-) True G492600
TU565019 lncRNA upstream 75028 11029464 ~ 11029680 (-) True G492603
TU565038 lncRNA upstream 103846 11058282 ~ 11058772 (-) True G492619
TU565060 lncRNA upstream 123200 11077636 ~ 11077841 (-) True G492630
CI01000340_10935675_10941448.mRNA mRNA downstream 10153 10935332 ~ 10941681 (-) True CI01000340_10935675_10941448
CI01000340_10924696_10934000.mRNA mRNA downstream 17834 10924384 ~ 10934000 (-) True CI01000340_10924696_10934000
CI01000340_10690474_10697545.mRNA mRNA downstream 252243 10689932 ~ 10699591 (-) True CI01000340_10690474_10697545
CI01000340_10667602_10671566.mRNA mRNA downstream 280268 10667532 ~ 10671566 (-) True CI01000340_10667602_10671566
CI01000340_10664417_10665925.mRNA mRNA downstream 285909 10664104 ~ 10665925 (-) True CI01000340_10664417_10665925
CI01000340_10962027_10966453.mRNA mRNA upstream 7288 10961724 ~ 10967360 (-) True CI01000340_10962027_10966453
CI01000340_10980323_10984372.mRNA mRNA upstream 25650 10980086 ~ 10984372 (-) True CI01000340_10980323_10984372
CI01000340_11005204_11007357.mRNA mRNA upstream 50002 11004438 ~ 11007434 (-) True CI01000340_11005204_11007357
CI01000340_11086607_11088953.mRNA mRNA upstream 131723 11086159 ~ 11089394 (-) True CI01000340_11086607_11088953
CI01000340_11092046_11095664.mRNA mRNA upstream 136859 11091295 ~ 11095664 (-) True CI01000340_11092046_11095664
TU564413 other downstream 589430 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 923851 10021892 ~ 10027983 (-) True G491883
TU564040 other downstream 2152257 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 4624462 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 4731192 6183290 ~ 6220642 (-) True G489516
TU565620 other upstream 719310 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 1112741 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 1154557 12108993 ~ 12116900 (-) True G493266
TU566559 other upstream 1657780 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 3258912 14213348 ~ 14320277 (-) True G494710

Expression Profile